Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
SPTA1P02549 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
SPTA1P02549 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SPTA1P02549 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SPTA1P02549 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC13.05□□□□□ -0.32
SPTA1P02549 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
SPTA1P02549 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
SPTA1P02549 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
SPTA1P02549 PHF5A-201ENST00000216252 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
SPTA1P02549 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC13.04□□□□□ -0.32
SPTA1P02549 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC13.04□□□□□ -0.32
SPTA1P02549 AC008026.2-201ENST00000495438 348 ntBASIC13.04□□□□□ -0.32
SPTA1P02549 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC13.04□□□□□ -0.32
SPTA1P02549 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC13.04□□□□□ -0.32
SPTA1P02549 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
SPTA1P02549 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC13.04□□□□□ -0.32
SPTA1P02549 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC13.04□□□□□ -0.32
SPTA1P02549 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC13.04□□□□□ -0.32
SPTA1P02549 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC13.04□□□□□ -0.32
SPTA1P02549 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.04□□□□□ -0.32
SPTA1P02549 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC13.04□□□□□ -0.32
SPTA1P02549 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC13.04□□□□□ -0.32
SPTA1P02549 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
SPTA1P02549 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.04□□□□□ -0.32
SPTA1P02549 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
SPTA1P02549 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC13.04□□□□□ -0.32
SPTA1P02549 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
SPTA1P02549 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC13.04□□□□□ -0.32
SPTA1P02549 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC13.04□□□□□ -0.32
SPTA1P02549 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC13.04□□□□□ -0.32
SPTA1P02549 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
SPTA1P02549 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC13.04□□□□□ -0.32
SPTA1P02549 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC13.04□□□□□ -0.32
SPTA1P02549 BAX-205ENST00000391871 687 ntTSL 5 BASIC13.04□□□□□ -0.32
SPTA1P02549 LINC00265-2P-201ENST00000413372 782 ntBASIC13.04□□□□□ -0.32
SPTA1P02549 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC13.04□□□□□ -0.32
SPTA1P02549 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 SNORD3B-1-201ENST00000577988 758 ntBASIC13.04□□□□□ -0.32
SPTA1P02549 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC13.04□□□□□ -0.32
SPTA1P02549 AL118522.1-201ENST00000611368 560 ntBASIC13.04□□□□□ -0.32
SPTA1P02549 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC13.04□□□□□ -0.32
SPTA1P02549 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
SPTA1P02549 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
SPTA1P02549 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
SPTA1P02549 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC13.04□□□□□ -0.32
SPTA1P02549 AC132872.4-202ENST00000622924 2756 ntBASIC13.04□□□□□ -0.32
SPTA1P02549 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SPTA1P02549 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SPTA1P02549 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SPTA1P02549 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SPTA1P02549 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SPTA1P02549 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
SPTA1P02549 MACROD2-204ENST00000407045 727 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SPTA1P02549 AC108734.2-201ENST00000420887 1069 ntBASIC13.03□□□□□ -0.32
SPTA1P02549 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC13.03□□□□□ -0.32
SPTA1P02549 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SPTA1P02549 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC13.03□□□□□ -0.32
SPTA1P02549 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC13.03□□□□□ -0.32
SPTA1P02549 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
SPTA1P02549 BCRP4-201ENST00000506079 804 ntBASIC13.03□□□□□ -0.32
SPTA1P02549 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC13.03□□□□□ -0.32
SPTA1P02549 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC13.03□□□□□ -0.32
SPTA1P02549 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC13.03□□□□□ -0.32
SPTA1P02549 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC13.03□□□□□ -0.32
SPTA1P02549 MIEF1-215ENST00000637854 213 ntBASIC13.03□□□□□ -0.32
SPTA1P02549 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SPTA1P02549 KHSRPP1-201ENST00000427983 1768 ntBASIC13.03□□□□□ -0.32
SPTA1P02549 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC13.03□□□□□ -0.32
SPTA1P02549 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SPTA1P02549 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC13.03□□□□□ -0.32
SPTA1P02549 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC13.03□□□□□ -0.32
SPTA1P02549 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC13.03□□□□□ -0.32
SPTA1P02549 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
SPTA1P02549 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SPTA1P02549 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SPTA1P02549 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC13.03□□□□□ -0.32
SPTA1P02549 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC13.03□□□□□ -0.32
SPTA1P02549 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SPTA1P02549 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms