Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 SARS-202ENST00000369923 1882 ntTSL 5 BASIC17.77■□□□□ 0.43
SYNE4Q8N205 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC17.77■□□□□ 0.43
SYNE4Q8N205 ADK-205ENST00000539909 1866 ntTSL 2 BASIC17.77■□□□□ 0.43
SYNE4Q8N205 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SYNE4Q8N205 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SYNE4Q8N205 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
SYNE4Q8N205 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
SYNE4Q8N205 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC17.77■□□□□ 0.43
SYNE4Q8N205 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SYNE4Q8N205 AC106881.1-201ENST00000605849 3329 ntBASIC17.77■□□□□ 0.43
SYNE4Q8N205 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE4Q8N205 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC17.76■□□□□ 0.43
SYNE4Q8N205 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE4Q8N205 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC17.76■□□□□ 0.43
SYNE4Q8N205 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC17.76■□□□□ 0.43
SYNE4Q8N205 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE4Q8N205 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE4Q8N205 KRT8P18-201ENST00000413425 1445 ntBASIC17.76■□□□□ 0.43
SYNE4Q8N205 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
SYNE4Q8N205 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE4Q8N205 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC17.76■□□□□ 0.43
SYNE4Q8N205 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC17.76■□□□□ 0.43
SYNE4Q8N205 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC17.76■□□□□ 0.43
SYNE4Q8N205 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC17.76■□□□□ 0.43
SYNE4Q8N205 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC17.76■□□□□ 0.43
SYNE4Q8N205 AC140113.1-201ENST00000603467 169 ntBASIC17.76■□□□□ 0.43
SYNE4Q8N205 MIR6074-201ENST00000612054 107 ntBASIC17.76■□□□□ 0.43
SYNE4Q8N205 AP001527.2-201ENST00000614441 631 ntBASIC17.76■□□□□ 0.43
SYNE4Q8N205 AC011471.3-201ENST00000623576 402 ntBASIC17.76■□□□□ 0.43
SYNE4Q8N205 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE4Q8N205 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE4Q8N205 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
SYNE4Q8N205 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE4Q8N205 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC17.76■□□□□ 0.43
SYNE4Q8N205 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE4Q8N205 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE4Q8N205 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE4Q8N205 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE4Q8N205 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE4Q8N205 USP28-214ENST00000545540 3431 ntTSL 2 BASIC17.76■□□□□ 0.43
SYNE4Q8N205 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE4Q8N205 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE4Q8N205 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SYNE4Q8N205 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SYNE4Q8N205 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SYNE4Q8N205 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
SYNE4Q8N205 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 LINC02228-204ENST00000642115 2962 ntBASIC17.75■□□□□ 0.43
SYNE4Q8N205 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC17.75■□□□□ 0.43
SYNE4Q8N205 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 AC006987.1-201ENST00000413610 527 ntBASIC17.75■□□□□ 0.43
SYNE4Q8N205 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC17.75■□□□□ 0.43
SYNE4Q8N205 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC17.75■□□□□ 0.43
SYNE4Q8N205 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC17.75■□□□□ 0.43
SYNE4Q8N205 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC17.75■□□□□ 0.43
SYNE4Q8N205 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC17.75■□□□□ 0.43
SYNE4Q8N205 NT5C-204ENST00000578337 582 ntTSL 2 BASIC17.75■□□□□ 0.43
SYNE4Q8N205 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC17.75■□□□□ 0.43
SYNE4Q8N205 AP003392.6-201ENST00000607709 325 ntBASIC17.75■□□□□ 0.43
SYNE4Q8N205 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 MSANTD2P1-201ENST00000445341 1368 ntBASIC17.75■□□□□ 0.43
SYNE4Q8N205 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC17.75■□□□□ 0.43
SYNE4Q8N205 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SYNE4Q8N205 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC17.74■□□□□ 0.43
SYNE4Q8N205 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE4Q8N205 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE4Q8N205 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE4Q8N205 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE4Q8N205 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC17.74■□□□□ 0.43
SYNE4Q8N205 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE4Q8N205 AC140479.7-201ENST00000636301 2332 ntBASIC17.74■□□□□ 0.43
SYNE4Q8N205 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC17.74■□□□□ 0.43
SYNE4Q8N205 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE4Q8N205 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC17.74■□□□□ 0.43
SYNE4Q8N205 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE4Q8N205 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE4Q8N205 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC17.74■□□□□ 0.43
SYNE4Q8N205 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE4Q8N205 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE4Q8N205 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE4Q8N205 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SYNE4Q8N205 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC17.74■□□□□ 0.43
SYNE4Q8N205 KRT17P4-201ENST00000429445 819 ntBASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms