Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AL008718.2-201ENST00000609206 1313 ntBASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 AL354702.1-201ENST00000442006 1960 ntBASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 PDIA3P2-201ENST00000428073 158 ntBASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 AC012441.2-201ENST00000444843 739 ntBASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 RCC2P8-201ENST00000502779 1035 ntBASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 AC009779.1-201ENST00000551138 283 ntBASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 AC008825.2-201ENST00000603374 718 ntBASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 AP000346.4-201ENST00000614827 381 ntBASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 NAP1L6-202ENST00000641404 1222 ntBASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 AC016397.2-201ENST00000624848 1985 ntBASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 PPT1-213ENST00000641319 2388 ntBASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 AC006480.2-201ENST00000609770 1337 ntBASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 AL353637.1-201ENST00000451571 732 ntBASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 AC090857.1-201ENST00000527400 390 ntBASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC144BQ3MJ40 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 LILRP1-201ENST00000444199 1370 ntBASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms