Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC23.34■■□□□ 1.33
CUX1P39880 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC23.34■■□□□ 1.33
CUX1P39880 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC23.34■■□□□ 1.33
CUX1P39880 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC23.34■■□□□ 1.33
CUX1P39880 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC23.34■■□□□ 1.33
CUX1P39880 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC23.34■■□□□ 1.33
CUX1P39880 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
CUX1P39880 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CUX1P39880 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
CUX1P39880 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
CUX1P39880 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CUX1P39880 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
CUX1P39880 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CUX1P39880 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC23.34■■□□□ 1.33
CUX1P39880 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC23.33■■□□□ 1.33
CUX1P39880 GH1-203ENST00000351388 685 ntTSL 2 BASIC23.33■■□□□ 1.33
CUX1P39880 AIG1-203ENST00000367596 559 ntTSL 2 BASIC23.33■■□□□ 1.33
CUX1P39880 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC23.33■■□□□ 1.33
CUX1P39880 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC23.33■■□□□ 1.33
CUX1P39880 CCL19-202ENST00000378800 414 ntTSL 2 BASIC23.33■■□□□ 1.33
CUX1P39880 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC23.33■■□□□ 1.33
CUX1P39880 ALG1L15P-201ENST00000482834 794 ntBASIC23.33■■□□□ 1.33
CUX1P39880 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC23.33■■□□□ 1.33
CUX1P39880 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC23.33■■□□□ 1.33
CUX1P39880 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC23.33■■□□□ 1.33
CUX1P39880 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC23.33■■□□□ 1.33
CUX1P39880 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CUX1P39880 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CUX1P39880 USP39-207ENST00000450066 2086 ntTSL 2 BASIC23.33■■□□□ 1.33
CUX1P39880 AL050341.2-201ENST00000567508 1541 ntBASIC23.33■■□□□ 1.33
CUX1P39880 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
CUX1P39880 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CUX1P39880 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CUX1P39880 AC008620.2-201ENST00000510294 1569 ntBASIC23.33■■□□□ 1.33
CUX1P39880 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CUX1P39880 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC23.33■■□□□ 1.33
CUX1P39880 AC012617.1-204ENST00000586340 2305 ntBASIC23.33■■□□□ 1.32
CUX1P39880 LILRP2-202ENST00000413572 1383 ntBASIC23.33■■□□□ 1.32
CUX1P39880 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
CUX1P39880 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
CUX1P39880 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CUX1P39880 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CUX1P39880 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC23.33■■□□□ 1.32
CUX1P39880 SNU13-204ENST00000402458 462 ntTSL 3 BASIC23.33■■□□□ 1.32
CUX1P39880 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC23.33■■□□□ 1.32
CUX1P39880 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CUX1P39880 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC23.33■■□□□ 1.32
CUX1P39880 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC23.33■■□□□ 1.32
CUX1P39880 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CUX1P39880 AL139424.3-202ENST00000641619 917 ntBASIC23.33■■□□□ 1.32
CUX1P39880 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CUX1P39880 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CUX1P39880 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.32
CUX1P39880 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CUX1P39880 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CUX1P39880 NRADDP-202ENST00000641269 1585 ntBASIC23.32■■□□□ 1.32
CUX1P39880 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CUX1P39880 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
CUX1P39880 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CUX1P39880 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
CUX1P39880 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CUX1P39880 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CUX1P39880 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC23.32■■□□□ 1.32
CUX1P39880 RN7SL578P-201ENST00000477781 283 ntBASIC23.32■■□□□ 1.32
CUX1P39880 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
CUX1P39880 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC23.32■■□□□ 1.32
CUX1P39880 AC132812.1-201ENST00000583145 892 ntBASIC23.32■■□□□ 1.32
CUX1P39880 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CUX1P39880 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC23.32■■□□□ 1.32
CUX1P39880 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CUX1P39880 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC23.32■■□□□ 1.32
CUX1P39880 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
CUX1P39880 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CUX1P39880 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC23.32■■□□□ 1.32
CUX1P39880 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CUX1P39880 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CUX1P39880 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CUX1P39880 AC093462.1-201ENST00000621167 1683 ntBASIC23.31■■□□□ 1.32
CUX1P39880 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
CUX1P39880 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CUX1P39880 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CUX1P39880 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CUX1P39880 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CUX1P39880 AL121949.3-201ENST00000406684 385 ntBASIC23.31■■□□□ 1.32
CUX1P39880 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
CUX1P39880 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC23.31■■□□□ 1.32
CUX1P39880 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
CUX1P39880 AC092910.2-201ENST00000491262 348 ntBASIC23.31■■□□□ 1.32
CUX1P39880 RPL29P2-202ENST00000498671 657 ntBASIC23.31■■□□□ 1.32
CUX1P39880 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC23.31■■□□□ 1.32
CUX1P39880 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC23.31■■□□□ 1.32
CUX1P39880 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC23.31■■□□□ 1.32
CUX1P39880 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC23.31■■□□□ 1.32
CUX1P39880 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC23.31■■□□□ 1.32
CUX1P39880 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC23.31■■□□□ 1.32
CUX1P39880 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC23.31■■□□□ 1.32
CUX1P39880 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CUX1P39880 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC23.31■■□□□ 1.32
CUX1P39880 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CUX1P39880 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms