Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC12.35□□□□□ -0.43
USF1P22415 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
USF1P22415 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
USF1P22415 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
USF1P22415 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC12.34□□□□□ -0.43
USF1P22415 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC12.34□□□□□ -0.43
USF1P22415 CTBP1-AS2-206ENST00000581398 5652 ntBASIC12.34□□□□□ -0.43
USF1P22415 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC12.34□□□□□ -0.43
USF1P22415 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
USF1P22415 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC12.34□□□□□ -0.43
USF1P22415 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
USF1P22415 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
USF1P22415 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC12.34□□□□□ -0.43
USF1P22415 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
USF1P22415 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
USF1P22415 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC12.34□□□□□ -0.43
USF1P22415 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
USF1P22415 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
USF1P22415 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
USF1P22415 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
USF1P22415 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
USF1P22415 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC12.34□□□□□ -0.43
USF1P22415 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
USF1P22415 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC12.34□□□□□ -0.43
USF1P22415 UFM1-202ENST00000379649 846 ntTSL 4 BASIC12.34□□□□□ -0.43
USF1P22415 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC12.34□□□□□ -0.43
USF1P22415 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
USF1P22415 VDAC1P1-201ENST00000439229 848 ntBASIC12.34□□□□□ -0.43
USF1P22415 AC008267.1-201ENST00000474858 1069 ntBASIC12.34□□□□□ -0.43
USF1P22415 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC12.34□□□□□ -0.43
USF1P22415 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
USF1P22415 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC12.34□□□□□ -0.43
USF1P22415 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC12.34□□□□□ -0.43
USF1P22415 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
USF1P22415 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC12.34□□□□□ -0.43
USF1P22415 MIR6720-201ENST00000611664 98 ntBASIC12.34□□□□□ -0.43
USF1P22415 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC12.34□□□□□ -0.43
USF1P22415 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC12.34□□□□□ -0.43
USF1P22415 MBLAC2-202ENST00000514906 1936 ntBASIC12.34□□□□□ -0.43
USF1P22415 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC12.34□□□□□ -0.43
USF1P22415 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
USF1P22415 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC12.34□□□□□ -0.43
USF1P22415 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
USF1P22415 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC12.34□□□□□ -0.43
USF1P22415 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
USF1P22415 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC12.34□□□□□ -0.43
USF1P22415 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
USF1P22415 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
USF1P22415 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
USF1P22415 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
USF1P22415 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC12.34□□□□□ -0.43
USF1P22415 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC12.34□□□□□ -0.43
USF1P22415 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC12.34□□□□□ -0.43
USF1P22415 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
USF1P22415 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
USF1P22415 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
USF1P22415 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC12.33□□□□□ -0.43
USF1P22415 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
USF1P22415 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC12.33□□□□□ -0.44
USF1P22415 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC12.33□□□□□ -0.44
USF1P22415 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
USF1P22415 LILRP1-201ENST00000444199 1370 ntBASIC12.33□□□□□ -0.44
USF1P22415 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC12.33□□□□□ -0.44
USF1P22415 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC12.33□□□□□ -0.44
USF1P22415 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC12.33□□□□□ -0.44
USF1P22415 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
USF1P22415 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
USF1P22415 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC12.33□□□□□ -0.44
USF1P22415 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
USF1P22415 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
USF1P22415 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
USF1P22415 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
USF1P22415 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
USF1P22415 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
USF1P22415 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
USF1P22415 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC12.33□□□□□ -0.44
USF1P22415 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
USF1P22415 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
USF1P22415 IGF1-203ENST00000392904 761 ntTSL 5 BASIC12.33□□□□□ -0.44
USF1P22415 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
USF1P22415 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
USF1P22415 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC12.33□□□□□ -0.44
USF1P22415 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
USF1P22415 PDIA3P2-201ENST00000428073 158 ntBASIC12.33□□□□□ -0.44
USF1P22415 KLF2P1-201ENST00000447438 1042 ntBASIC12.33□□□□□ -0.44
USF1P22415 AL035414.1-201ENST00000451327 857 ntBASIC12.33□□□□□ -0.44
USF1P22415 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC12.33□□□□□ -0.44
USF1P22415 AC019193.1-201ENST00000506678 823 ntBASIC12.33□□□□□ -0.44
USF1P22415 AC116345.2-201ENST00000512837 523 ntBASIC12.33□□□□□ -0.44
USF1P22415 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
USF1P22415 SCARNA21-201ENST00000517026 139 ntBASIC12.33□□□□□ -0.44
USF1P22415 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC12.33□□□□□ -0.44
USF1P22415 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC12.33□□□□□ -0.44
USF1P22415 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC12.33□□□□□ -0.44
USF1P22415 AC103988.2-201ENST00000561804 725 ntBASIC12.33□□□□□ -0.44
USF1P22415 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
USF1P22415 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC12.33□□□□□ -0.44
USF1P22415 MIR5572-201ENST00000583188 137 ntBASIC12.33□□□□□ -0.44
USF1P22415 AC005962.1-201ENST00000584100 773 ntBASIC12.33□□□□□ -0.44
USF1P22415 AC027601.3-201ENST00000622907 509 ntBASIC12.33□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms