Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A3P12111 PXK-210ENST00000479241 2817 ntTSL 2 BASIC14.44□□□□□ -0.1
COL6A3P12111 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
COL6A3P12111 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A3P12111 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A3P12111 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC14.44□□□□□ -0.1
COL6A3P12111 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
COL6A3P12111 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
COL6A3P12111 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A3P12111 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A3P12111 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC14.43□□□□□ -0.1
COL6A3P12111 AC116347.1-201ENST00000442824 720 ntBASIC14.43□□□□□ -0.1
COL6A3P12111 AC096919.1-201ENST00000472730 652 ntBASIC14.43□□□□□ -0.1
COL6A3P12111 HAX1-211ENST00000532105 771 ntTSL 3 BASIC14.43□□□□□ -0.1
COL6A3P12111 AL139099.3-201ENST00000556657 401 ntTSL 3 BASIC14.43□□□□□ -0.1
COL6A3P12111 LINC02427-202ENST00000605270 1059 ntTSL 2 BASIC14.43□□□□□ -0.1
COL6A3P12111 C5orf60-208ENST00000625191 1208 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A3P12111 CD74-201ENST00000009530 981 ntAPPRIS P2 TSL 2 BASIC14.43□□□□□ -0.1
COL6A3P12111 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A3P12111 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A3P12111 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A3P12111 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.43□□□□□ -0.1
COL6A3P12111 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.43□□□□□ -0.1
COL6A3P12111 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
COL6A3P12111 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC14.43□□□□□ -0.1
COL6A3P12111 AC026271.1-201ENST00000447794 1348 ntBASIC14.43□□□□□ -0.1
COL6A3P12111 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A3P12111 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC14.43□□□□□ -0.1
COL6A3P12111 MYL2-201ENST00000228841 807 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A3P12111 NTF3-201ENST00000331010 1028 ntAPPRIS P3 BASIC14.43□□□□□ -0.1
COL6A3P12111 LDHAL6FP-201ENST00000405916 1082 ntBASIC14.43□□□□□ -0.1
COL6A3P12111 SNORD88B-201ENST00000408454 91 ntBASIC14.43□□□□□ -0.1
COL6A3P12111 AC093495.1-201ENST00000420253 1067 ntTSL 4 BASIC14.43□□□□□ -0.1
COL6A3P12111 HLA-W-207ENST00000439514 771 ntBASIC14.43□□□□□ -0.1
COL6A3P12111 CLPP-204ENST00000596149 745 ntTSL 2 BASIC14.43□□□□□ -0.1
COL6A3P12111 AC116036.2-201ENST00000607592 462 ntBASIC14.43□□□□□ -0.1
COL6A3P12111 AL161937.2-201ENST00000615503 403 ntTSL 2 BASIC14.43□□□□□ -0.1
COL6A3P12111 BACH1-AS1-202ENST00000615718 700 ntTSL 5 BASIC14.43□□□□□ -0.1
COL6A3P12111 AC073592.10-201ENST00000624789 597 ntBASIC14.43□□□□□ -0.1
COL6A3P12111 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.43□□□□□ -0.1
COL6A3P12111 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC14.43□□□□□ -0.1
COL6A3P12111 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A3P12111 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.43□□□□□ -0.1
COL6A3P12111 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A3P12111 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.43□□□□□ -0.1
COL6A3P12111 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A3P12111 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 RPSAP16-201ENST00000447583 821 ntBASIC14.42□□□□□ -0.1
COL6A3P12111 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC14.42□□□□□ -0.1
COL6A3P12111 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC14.42□□□□□ -0.1
COL6A3P12111 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC14.42□□□□□ -0.1
COL6A3P12111 ADIPOR1P2-201ENST00000554199 820 ntBASIC14.42□□□□□ -0.1
COL6A3P12111 AC132825.4-202ENST00000578792 434 ntBASIC14.42□□□□□ -0.1
COL6A3P12111 AC015688.5-201ENST00000584605 603 ntAPPRIS P5 TSL 2 BASIC14.42□□□□□ -0.1
COL6A3P12111 AC091736.1-201ENST00000609370 305 ntBASIC14.42□□□□□ -0.1
COL6A3P12111 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC14.42□□□□□ -0.1
COL6A3P12111 SLC25A19-204ENST00000416858 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.42□□□□□ -0.1
COL6A3P12111 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC14.42□□□□□ -0.1
COL6A3P12111 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC14.42□□□□□ -0.1
COL6A3P12111 CCT8L1P-201ENST00000465400 1674 ntBASIC14.42□□□□□ -0.1
COL6A3P12111 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC14.42□□□□□ -0.1
COL6A3P12111 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC14.42□□□□□ -0.1
COL6A3P12111 HLA-DQB3-203ENST00000425319 356 ntBASIC14.42□□□□□ -0.1
COL6A3P12111 HTATIP2-203ENST00000443524 967 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
COL6A3P12111 SPG20-AS1-203ENST00000493739 566 ntTSL 3 BASIC14.42□□□□□ -0.1
COL6A3P12111 AKR1B1P3-201ENST00000525311 588 ntBASIC14.42□□□□□ -0.1
COL6A3P12111 AC133555.4-201ENST00000569081 152 ntBASIC14.42□□□□□ -0.1
COL6A3P12111 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
COL6A3P12111 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.42□□□□□ -0.1
COL6A3P12111 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 C1QTNF3-201ENST00000231338 1959 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 LINC02433-202ENST00000507108 1395 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.42□□□□□ -0.1
COL6A3P12111 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
COL6A3P12111 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC14.42□□□□□ -0.1
COL6A3P12111 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
COL6A3P12111 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 GNLY-201ENST00000263863 846 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 MRPL55-210ENST00000366736 660 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
COL6A3P12111 MUC1-207ENST00000368392 1032 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 MUC1-208ENST00000368393 937 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 SH3BGR-202ENST00000380631 780 ntTSL 5 BASIC14.42□□□□□ -0.1
COL6A3P12111 MUC1-213ENST00000462215 1189 ntTSL 2 BASIC14.42□□□□□ -0.1
COL6A3P12111 AC025178.1-201ENST00000503441 834 ntTSL 2 BASIC14.42□□□□□ -0.1
COL6A3P12111 MIR4689-201ENST00000582517 70 ntBASIC14.42□□□□□ -0.1
COL6A3P12111 AC006449.2-201ENST00000618407 486 ntTSL 2 BASIC14.42□□□□□ -0.1
COL6A3P12111 SLC50A1-214ENST00000622581 1245 ntTSL 5 BASIC14.42□□□□□ -0.1
COL6A3P12111 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms