Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC16.95■□□□□ 0.3
HLA-DOAP06340 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DOAP06340 Z69890.1-201ENST00000382990 339 ntBASIC16.95■□□□□ 0.3
HLA-DOAP06340 BAX-205ENST00000391871 687 ntTSL 5 BASIC16.95■□□□□ 0.3
HLA-DOAP06340 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DOAP06340 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DOAP06340 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DOAP06340 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
HLA-DOAP06340 AL512306.1-201ENST00000432698 848 ntBASIC16.95■□□□□ 0.3
HLA-DOAP06340 MT3-203ENST00000565838 421 ntTSL 3 BASIC16.95■□□□□ 0.3
HLA-DOAP06340 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DOAP06340 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
HLA-DOAP06340 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DOAP06340 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC16.95■□□□□ 0.3
HLA-DOAP06340 AP001184.1-201ENST00000637936 376 ntBASIC16.95■□□□□ 0.3
HLA-DOAP06340 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DOAP06340 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DOAP06340 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DOAP06340 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DOAP06340 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DOAP06340 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC16.95■□□□□ 0.3
HLA-DOAP06340 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DOAP06340 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DOAP06340 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DOAP06340 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DOAP06340 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
HLA-DOAP06340 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DOAP06340 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.95■□□□□ 0.3
HLA-DOAP06340 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
HLA-DOAP06340 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.95■□□□□ 0.3
HLA-DOAP06340 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DOAP06340 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
HLA-DOAP06340 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.95■□□□□ 0.3
HLA-DOAP06340 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC16.94■□□□□ 0.3
HLA-DOAP06340 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC16.94■□□□□ 0.3
HLA-DOAP06340 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DOAP06340 AC011498.7-201ENST00000624986 2027 ntBASIC16.94■□□□□ 0.3
HLA-DOAP06340 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DOAP06340 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DOAP06340 AC113367.3-201ENST00000508316 1912 ntBASIC16.94■□□□□ 0.3
HLA-DOAP06340 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DOAP06340 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DOAP06340 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DOAP06340 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DOAP06340 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC16.94■□□□□ 0.3
HLA-DOAP06340 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DOAP06340 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DOAP06340 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC16.94■□□□□ 0.3
HLA-DOAP06340 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DOAP06340 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
HLA-DOAP06340 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC16.94■□□□□ 0.3
HLA-DOAP06340 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC16.94■□□□□ 0.3
HLA-DOAP06340 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC16.94■□□□□ 0.3
HLA-DOAP06340 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DOAP06340 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC16.94■□□□□ 0.3
HLA-DOAP06340 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC16.94■□□□□ 0.3
HLA-DOAP06340 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DOAP06340 NUDT4P2-201ENST00000578341 546 ntBASIC16.94■□□□□ 0.3
HLA-DOAP06340 RPL17P45-201ENST00000586289 509 ntBASIC16.94■□□□□ 0.3
HLA-DOAP06340 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DOAP06340 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC16.94■□□□□ 0.3
HLA-DOAP06340 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DOAP06340 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC16.94■□□□□ 0.3
HLA-DOAP06340 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC16.94■□□□□ 0.3
HLA-DOAP06340 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DOAP06340 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DOAP06340 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
HLA-DOAP06340 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DOAP06340 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC16.94■□□□□ 0.3
HLA-DOAP06340 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DOAP06340 LINC01815-202ENST00000641468 1409 ntBASIC16.94■□□□□ 0.3
HLA-DOAP06340 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
HLA-DOAP06340 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DOAP06340 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DOAP06340 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DOAP06340 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DOAP06340 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 OR2I1P-210ENST00000642037 4691 ntBASIC16.93■□□□□ 0.3
HLA-DOAP06340 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DOAP06340 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DOAP06340 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DOAP06340 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DOAP06340 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DOAP06340 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DOAP06340 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DOAP06340 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DOAP06340 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DOAP06340 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 HLA-DMA-203ENST00000395305 777 ntBASIC16.93■□□□□ 0.3
HLA-DOAP06340 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DOAP06340 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DOAP06340 AC006987.1-201ENST00000413610 527 ntBASIC16.93■□□□□ 0.3
HLA-DOAP06340 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 RPL18AP3-201ENST00000462885 528 ntBASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms