Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AL139424.3-202ENST00000641619 917 ntBASIC18.65■□□□□ 0.58
COL3A1P02461 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL3A1P02461 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL3A1P02461 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC18.65■□□□□ 0.58
COL3A1P02461 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL3A1P02461 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC18.65■□□□□ 0.58
COL3A1P02461 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL3A1P02461 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL3A1P02461 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
COL3A1P02461 AC090340.1-201ENST00000620778 4980 ntBASIC18.65■□□□□ 0.58
COL3A1P02461 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
COL3A1P02461 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL3A1P02461 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL3A1P02461 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL3A1P02461 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL3A1P02461 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
COL3A1P02461 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC18.65■□□□□ 0.58
COL3A1P02461 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC18.65■□□□□ 0.58
COL3A1P02461 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL3A1P02461 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL3A1P02461 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL3A1P02461 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL3A1P02461 MPRIPP1-201ENST00000452433 1089 ntBASIC18.65■□□□□ 0.58
COL3A1P02461 RN7SL8P-201ENST00000461771 266 ntBASIC18.65■□□□□ 0.58
COL3A1P02461 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC18.65■□□□□ 0.58
COL3A1P02461 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC18.65■□□□□ 0.58
COL3A1P02461 SNORD3B-1-201ENST00000577988 758 ntBASIC18.65■□□□□ 0.58
COL3A1P02461 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
COL3A1P02461 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL3A1P02461 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
COL3A1P02461 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL3A1P02461 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
COL3A1P02461 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL3A1P02461 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL3A1P02461 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL3A1P02461 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
COL3A1P02461 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC18.64■□□□□ 0.57
COL3A1P02461 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC18.64■□□□□ 0.57
COL3A1P02461 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL3A1P02461 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL3A1P02461 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
COL3A1P02461 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC18.64■□□□□ 0.57
COL3A1P02461 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
COL3A1P02461 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL3A1P02461 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC18.64■□□□□ 0.57
COL3A1P02461 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL3A1P02461 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL3A1P02461 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC18.64■□□□□ 0.57
COL3A1P02461 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL3A1P02461 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC18.64■□□□□ 0.57
COL3A1P02461 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC18.64■□□□□ 0.57
COL3A1P02461 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC18.64■□□□□ 0.57
COL3A1P02461 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL3A1P02461 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC18.64■□□□□ 0.57
COL3A1P02461 AC132825.4-202ENST00000578792 434 ntBASIC18.64■□□□□ 0.57
COL3A1P02461 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC18.64■□□□□ 0.57
COL3A1P02461 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
COL3A1P02461 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL3A1P02461 SNX1-214ENST00000625244 324 ntTSL 5 BASIC18.64■□□□□ 0.57
COL3A1P02461 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC18.64■□□□□ 0.57
COL3A1P02461 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL3A1P02461 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL3A1P02461 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC18.63■□□□□ 0.57
COL3A1P02461 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC18.63■□□□□ 0.57
COL3A1P02461 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC18.63■□□□□ 0.57
COL3A1P02461 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
COL3A1P02461 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL3A1P02461 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL3A1P02461 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL3A1P02461 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
COL3A1P02461 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
COL3A1P02461 AL009178.2-201ENST00000597278 2719 ntBASIC18.63■□□□□ 0.57
COL3A1P02461 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL3A1P02461 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL3A1P02461 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL3A1P02461 AC073210.1-201ENST00000414799 232 ntBASIC18.63■□□□□ 0.57
COL3A1P02461 RN7SL767P-201ENST00000493013 295 ntBASIC18.63■□□□□ 0.57
COL3A1P02461 PRSS3P1-201ENST00000503996 742 ntBASIC18.63■□□□□ 0.57
COL3A1P02461 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC18.63■□□□□ 0.57
COL3A1P02461 U62317.3-201ENST00000608319 855 ntBASIC18.63■□□□□ 0.57
COL3A1P02461 AC002044.2-201ENST00000624910 970 ntBASIC18.63■□□□□ 0.57
COL3A1P02461 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL3A1P02461 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC18.63■□□□□ 0.57
COL3A1P02461 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
COL3A1P02461 AC061965.1-201ENST00000560524 1465 ntBASIC18.63■□□□□ 0.57
COL3A1P02461 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL3A1P02461 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL3A1P02461 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL3A1P02461 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL3A1P02461 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL3A1P02461 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL3A1P02461 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC18.62■□□□□ 0.57
COL3A1P02461 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC18.62■□□□□ 0.57
COL3A1P02461 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL3A1P02461 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL3A1P02461 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL3A1P02461 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL3A1P02461 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
COL3A1P02461 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL3A1P02461 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms