Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
PDLIM1O00151 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
PDLIM1O00151 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
PDLIM1O00151 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
PDLIM1O00151 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
PDLIM1O00151 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
PDLIM1O00151 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
PDLIM1O00151 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC13.89□□□□□ -0.19
PDLIM1O00151 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC13.89□□□□□ -0.19
PDLIM1O00151 GNAQP1-201ENST00000444815 1067 ntBASIC13.89□□□□□ -0.19
PDLIM1O00151 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC13.89□□□□□ -0.19
PDLIM1O00151 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC13.89□□□□□ -0.19
PDLIM1O00151 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC13.89□□□□□ -0.19
PDLIM1O00151 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC13.89□□□□□ -0.19
PDLIM1O00151 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC13.89□□□□□ -0.19
PDLIM1O00151 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC13.89□□□□□ -0.19
PDLIM1O00151 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
PDLIM1O00151 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC13.89□□□□□ -0.19
PDLIM1O00151 DQX1-202ENST00000404568 2689 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
PDLIM1O00151 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
PDLIM1O00151 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
PDLIM1O00151 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC13.89□□□□□ -0.19
PDLIM1O00151 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
PDLIM1O00151 BCAS3-221ENST00000588874 2948 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
PDLIM1O00151 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC13.89□□□□□ -0.19
PDLIM1O00151 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
PDLIM1O00151 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
PDLIM1O00151 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
PDLIM1O00151 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
PDLIM1O00151 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
PDLIM1O00151 DMBT1P1-203ENST00000636837 4628 ntBASIC13.89□□□□□ -0.19
PDLIM1O00151 CCT3-211ENST00000472765 1858 ntTSL 2 BASIC13.89□□□□□ -0.19
PDLIM1O00151 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
PDLIM1O00151 CDC20-201ENST00000310955 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
PDLIM1O00151 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC13.88□□□□□ -0.19
PDLIM1O00151 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC13.88□□□□□ -0.19
PDLIM1O00151 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC13.88□□□□□ -0.19
PDLIM1O00151 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC13.88□□□□□ -0.19
PDLIM1O00151 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC13.88□□□□□ -0.19
PDLIM1O00151 AC010536.1-201ENST00000538868 2611 ntBASIC13.88□□□□□ -0.19
PDLIM1O00151 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 AL031595.1-201ENST00000623969 4709 ntBASIC13.88□□□□□ -0.19
PDLIM1O00151 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 SPDYE19P-201ENST00000338590 713 ntBASIC13.88□□□□□ -0.19
PDLIM1O00151 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
PDLIM1O00151 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
PDLIM1O00151 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC13.88□□□□□ -0.19
PDLIM1O00151 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
PDLIM1O00151 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
PDLIM1O00151 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
PDLIM1O00151 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 PIN1P1-201ENST00000412108 996 ntBASIC13.88□□□□□ -0.19
PDLIM1O00151 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC13.88□□□□□ -0.19
PDLIM1O00151 HLA-K-203ENST00000430151 1046 ntBASIC13.88□□□□□ -0.19
PDLIM1O00151 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC13.88□□□□□ -0.19
PDLIM1O00151 MEIS3P1-201ENST00000495167 958 ntBASIC13.88□□□□□ -0.19
PDLIM1O00151 AC004066.1-201ENST00000502488 802 ntBASIC13.88□□□□□ -0.19
PDLIM1O00151 AC093004.1-201ENST00000508850 424 ntBASIC13.88□□□□□ -0.19
PDLIM1O00151 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC13.88□□□□□ -0.19
PDLIM1O00151 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC13.88□□□□□ -0.19
PDLIM1O00151 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC13.88□□□□□ -0.19
PDLIM1O00151 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC13.88□□□□□ -0.19
PDLIM1O00151 LINC02084-201ENST00000606069 1096 ntBASIC13.88□□□□□ -0.19
PDLIM1O00151 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC13.88□□□□□ -0.19
PDLIM1O00151 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
PDLIM1O00151 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
PDLIM1O00151 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC13.88□□□□□ -0.19
PDLIM1O00151 TKT-203ENST00000423525 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC13.88□□□□□ -0.19
PDLIM1O00151 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 EGFLAM-204ENST00000397202 2398 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC13.88□□□□□ -0.19
PDLIM1O00151 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 MKNK1-201ENST00000341183 2612 ntTSL 5 BASIC13.88□□□□□ -0.19
PDLIM1O00151 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM1O00151 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
PDLIM1O00151 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms