Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 GSN-209ENST00000449733 2702 ntTSL 2 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 RAB6B-201ENST00000285208 5526 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 CD8B2-202ENST00000417670 633 ntBASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 TP53TG3HP-202ENST00000569755 579 ntBASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 PIGL-212ENST00000581006 554 ntTSL 4 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 INO80C-206ENST00000586489 594 ntTSL 3 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 AL138709.1-201ENST00000614840 1693 ntBASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC12.72□□□□□ -0.37
CCDC54Q8NEL0 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 CACNA1G-207ENST00000429973 7120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 CACNA1G-217ENST00000507336 7116 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 AC006001.3-201ENST00000449307 7092 ntTSL 3 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 PPP1R12A-201ENST00000261207 5582 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 LINC01230-201ENST00000625222 3017 ntBASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 ADAMTS9-210ENST00000498707 7624 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 PDE7B-203ENST00000615259 5234 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 SCOC-210ENST00000608372 5129 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 AL355864.2-201ENST00000447420 863 ntBASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 AL096865.1-201ENST00000606796 927 ntBASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC12.71□□□□□ -0.37
CCDC54Q8NEL0 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms