Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 AC092978.1-202ENST00000637590 1327 ntBASIC15.79■□□□□ 0.12
VPS52Q8N1B4 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 AC078875.1-201ENST00000431907 724 ntBASIC15.79■□□□□ 0.12
VPS52Q8N1B4 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 CICP12-201ENST00000455801 843 ntBASIC15.79■□□□□ 0.12
VPS52Q8N1B4 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 CCNC-217ENST00000523985 958 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 AC018635.2-201ENST00000608625 364 ntBASIC15.79■□□□□ 0.12
VPS52Q8N1B4 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 AL390755.1-201ENST00000623716 2027 ntBASIC15.78■□□□□ 0.12
VPS52Q8N1B4 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 TBC1D3J-201ENST00000620719 1426 ntBASIC15.78■□□□□ 0.12
VPS52Q8N1B4 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 AC239868.1-201ENST00000369385 493 ntBASIC15.78■□□□□ 0.12
VPS52Q8N1B4 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 RPL17P11-201ENST00000417593 544 ntBASIC15.78■□□□□ 0.12
VPS52Q8N1B4 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 FGFR3P1-201ENST00000449999 601 ntBASIC15.78■□□□□ 0.12
VPS52Q8N1B4 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 BX088702.1-201ENST00000610784 235 ntBASIC15.78■□□□□ 0.12
VPS52Q8N1B4 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC15.78■□□□□ 0.12
VPS52Q8N1B4 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 DKFZP434A062-201ENST00000573103 5021 ntBASIC15.78■□□□□ 0.12
VPS52Q8N1B4 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 KRT8P21-201ENST00000430398 1491 ntBASIC15.78■□□□□ 0.12
VPS52Q8N1B4 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS52Q8N1B4 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VPS52Q8N1B4 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VPS52Q8N1B4 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS52Q8N1B4 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS52Q8N1B4 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
VPS52Q8N1B4 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS52Q8N1B4 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS52Q8N1B4 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VPS52Q8N1B4 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VPS52Q8N1B4 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VPS52Q8N1B4 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS52Q8N1B4 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
VPS52Q8N1B4 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC15.77■□□□□ 0.12
VPS52Q8N1B4 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS52Q8N1B4 AC026316.1-201ENST00000398900 414 ntBASIC15.77■□□□□ 0.12
VPS52Q8N1B4 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 428 ms