Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 INO80C-210ENST00000590757 595 ntTSL 2 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 CACNB4-210ENST00000539935 8378 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 AL354702.1-201ENST00000442006 1960 ntBASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 AC079781.5-202ENST00000641784 3743 ntBASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 CACNA1G-226ENST00000513689 6879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 CACNA1G-231ENST00000515165 6870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 Z83844.1-201ENST00000455236 4904 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 BTRC-202ENST00000370187 6134 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 KRT8P19-201ENST00000551916 1455 ntBASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 WNT5A-201ENST00000264634 6176 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 NAA15-202ENST00000398947 6072 ntAPPRIS ALT1 TSL 5 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 PKIG-203ENST00000372887 769 ntTSL 3 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 RAD18-204ENST00000418463 563 ntTSL 4 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 RAD18-205ENST00000421052 582 ntTSL 3 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 AKR7A2P1-201ENST00000460134 915 ntBASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 AC079316.1-201ENST00000548397 411 ntBASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 RPSAP52-203ENST00000622976 1023 ntBASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 ABBA01031663.1-201ENST00000635630 790 ntBASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 SNED1-201ENST00000310397 8174 ntAPPRIS P2 TSL 5 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 TECTA-201ENST00000264037 6468 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms