Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
COL4A4P53420 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC15.01□□□□□ -0.01
COL4A4P53420 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL4A4P53420 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL4A4P53420 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.01□□□□□ -0.01
COL4A4P53420 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL4A4P53420 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC15.01□□□□□ -0.01
COL4A4P53420 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.01□□□□□ -0.01
COL4A4P53420 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.01□□□□□ -0.01
COL4A4P53420 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC15.01□□□□□ -0.01
COL4A4P53420 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL4A4P53420 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL4A4P53420 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
COL4A4P53420 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL4A4P53420 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC15□□□□□ -0.01
COL4A4P53420 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL4A4P53420 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL4A4P53420 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
COL4A4P53420 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL4A4P53420 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15□□□□□ -0.01
COL4A4P53420 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15□□□□□ -0.01
COL4A4P53420 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL4A4P53420 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC15□□□□□ -0.01
COL4A4P53420 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
COL4A4P53420 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15□□□□□ -0.01
COL4A4P53420 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
COL4A4P53420 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL4A4P53420 USP17L6P-201ENST00000382470 1197 ntBASIC15□□□□□ -0.01
COL4A4P53420 OR7E115P-201ENST00000382617 1024 ntBASIC15□□□□□ -0.01
COL4A4P53420 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
COL4A4P53420 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
COL4A4P53420 KRT8P30-201ENST00000432100 650 ntBASIC15□□□□□ -0.01
COL4A4P53420 AC092573.1-201ENST00000433054 884 ntBASIC15□□□□□ -0.01
COL4A4P53420 PRSS3P1-201ENST00000503996 742 ntBASIC15□□□□□ -0.01
COL4A4P53420 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL4A4P53420 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC15□□□□□ -0.01
COL4A4P53420 AC120498.7-201ENST00000562876 330 ntBASIC15□□□□□ -0.01
COL4A4P53420 AC139713.2-207ENST00000641556 1292 ntBASIC15□□□□□ -0.01
COL4A4P53420 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
COL4A4P53420 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL4A4P53420 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC15□□□□□ -0.01
COL4A4P53420 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC15□□□□□ -0.01
COL4A4P53420 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
COL4A4P53420 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL4A4P53420 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC15□□□□□ -0.01
COL4A4P53420 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL4A4P53420 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL4A4P53420 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC15□□□□□ -0.01
COL4A4P53420 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
COL4A4P53420 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL4A4P53420 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15□□□□□ -0.01
COL4A4P53420 SNX15-201ENST00000352068 771 ntTSL 5 BASIC15□□□□□ -0.01
COL4A4P53420 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC15□□□□□ -0.01
COL4A4P53420 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC15□□□□□ -0.01
COL4A4P53420 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC15□□□□□ -0.01
COL4A4P53420 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC15□□□□□ -0.01
COL4A4P53420 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC15□□□□□ -0.01
COL4A4P53420 ZNF877P-201ENST00000437614 612 ntBASIC15□□□□□ -0.01
COL4A4P53420 ASS1P2-201ENST00000439895 1223 ntBASIC15□□□□□ -0.01
COL4A4P53420 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC15□□□□□ -0.01
COL4A4P53420 RN7SL128P-201ENST00000467883 305 ntBASIC15□□□□□ -0.01
COL4A4P53420 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC15□□□□□ -0.01
COL4A4P53420 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC15□□□□□ -0.01
COL4A4P53420 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL4A4P53420 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC15□□□□□ -0.01
COL4A4P53420 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC15□□□□□ -0.01
COL4A4P53420 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC15□□□□□ -0.01
COL4A4P53420 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC15□□□□□ -0.01
COL4A4P53420 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC15□□□□□ -0.01
COL4A4P53420 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC15□□□□□ -0.01
COL4A4P53420 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC15□□□□□ -0.01
COL4A4P53420 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC15□□□□□ -0.01
COL4A4P53420 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15□□□□□ -0.01
COL4A4P53420 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL4A4P53420 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
COL4A4P53420 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL4A4P53420 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL4A4P53420 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC14.99□□□□□ -0.01
COL4A4P53420 TCAM1P-207ENST00000485295 1537 ntBASIC14.99□□□□□ -0.01
COL4A4P53420 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC14.99□□□□□ -0.01
COL4A4P53420 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL4A4P53420 USP39-220ENST00000613444 2161 ntTSL 2 BASIC14.99□□□□□ -0.01
COL4A4P53420 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
COL4A4P53420 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL4A4P53420 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
COL4A4P53420 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL4A4P53420 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC14.99□□□□□ -0.01
COL4A4P53420 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL4A4P53420 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL4A4P53420 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL4A4P53420 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL4A4P53420 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
COL4A4P53420 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC14.99□□□□□ -0.01
COL4A4P53420 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL4A4P53420 FAU-201ENST00000279259 461 ntTSL 2 BASIC14.99□□□□□ -0.01
COL4A4P53420 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
COL4A4P53420 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC14.99□□□□□ -0.01
COL4A4P53420 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC14.99□□□□□ -0.01
COL4A4P53420 RN7SL375P-201ENST00000492442 298 ntBASIC14.99□□□□□ -0.01
COL4A4P53420 SLC25A15P3-201ENST00000505530 290 ntBASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms