Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 MKX-201ENST00000375790 3846 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
MSX2P35548 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 HNRNPFP1-201ENST00000391730 1133 ntBASIC13.88□□□□□ -0.19
MSX2P35548 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC13.88□□□□□ -0.19
MSX2P35548 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC13.88□□□□□ -0.19
MSX2P35548 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC13.88□□□□□ -0.19
MSX2P35548 GLI4-203ENST00000517468 963 ntTSL 5 BASIC13.88□□□□□ -0.19
MSX2P35548 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC13.88□□□□□ -0.19
MSX2P35548 AC109322.1-201ENST00000524499 1264 ntBASIC13.88□□□□□ -0.19
MSX2P35548 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC13.88□□□□□ -0.19
MSX2P35548 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC13.88□□□□□ -0.19
MSX2P35548 VPS29-207ENST00000549970 818 ntTSL 3 BASIC13.88□□□□□ -0.19
MSX2P35548 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC13.88□□□□□ -0.19
MSX2P35548 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
MSX2P35548 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
MSX2P35548 RABGEF1-210ENST00000437078 4319 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
MSX2P35548 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 HERPUD1-204ENST00000439977 2946 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 BCAS3-221ENST00000588874 2948 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
MSX2P35548 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC13.88□□□□□ -0.19
MSX2P35548 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC13.88□□□□□ -0.19
MSX2P35548 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC13.88□□□□□ -0.19
MSX2P35548 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
MSX2P35548 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
MSX2P35548 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
MSX2P35548 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC13.88□□□□□ -0.19
MSX2P35548 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC13.88□□□□□ -0.19
MSX2P35548 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 TTC39B-201ENST00000297615 3053 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC13.87□□□□□ -0.19
MSX2P35548 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 CASC4-201ENST00000299957 3962 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 AC020910.5-201ENST00000623668 1865 ntBASIC13.87□□□□□ -0.19
MSX2P35548 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC13.87□□□□□ -0.19
MSX2P35548 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 KDM2B-215ENST00000542973 3170 ntTSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 PCDHB19P-202ENST00000625133 2914 ntBASIC13.87□□□□□ -0.19
MSX2P35548 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC13.87□□□□□ -0.19
MSX2P35548 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC13.87□□□□□ -0.19
MSX2P35548 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 AC112482.1-201ENST00000492080 688 ntBASIC13.87□□□□□ -0.19
MSX2P35548 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC13.87□□□□□ -0.19
MSX2P35548 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC13.87□□□□□ -0.19
MSX2P35548 METTL23-205ENST00000588302 925 ntTSL 5 BASIC13.87□□□□□ -0.19
MSX2P35548 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC13.87□□□□□ -0.19
MSX2P35548 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC13.87□□□□□ -0.19
MSX2P35548 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 KIF17-202ENST00000375044 3572 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
MSX2P35548 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 F2-205ENST00000530231 1849 ntTSL 5 BASIC13.87□□□□□ -0.19
MSX2P35548 NFKB1-202ENST00000394820 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
MSX2P35548 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 TNFRSF8-203ENST00000417814 3593 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 AL138725.1-201ENST00000407347 1314 ntBASIC13.87□□□□□ -0.19
MSX2P35548 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MSX2P35548 TUBGCP5-208ENST00000620435 3342 ntTSL 2 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms