Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC16.49■□□□□ 0.23
SCN4AP35499 AF186996.6-201ENST00000485294 149 ntBASIC16.49■□□□□ 0.23
SCN4AP35499 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SCN4AP35499 AC117834.1-201ENST00000523197 602 ntTSL 4 BASIC16.49■□□□□ 0.23
SCN4AP35499 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC16.49■□□□□ 0.23
SCN4AP35499 AC079331.1-201ENST00000623200 1200 ntBASIC16.49■□□□□ 0.23
SCN4AP35499 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SCN4AP35499 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
SCN4AP35499 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
SCN4AP35499 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.49■□□□□ 0.23
SCN4AP35499 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SCN4AP35499 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC16.49■□□□□ 0.23
SCN4AP35499 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC16.49■□□□□ 0.23
SCN4AP35499 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SCN4AP35499 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
SCN4AP35499 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC16.49■□□□□ 0.23
SCN4AP35499 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
SCN4AP35499 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SCN4AP35499 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SCN4AP35499 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SCN4AP35499 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.49■□□□□ 0.23
SCN4AP35499 HAX1-201ENST00000328703 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SCN4AP35499 ZMAT5-201ENST00000344318 899 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SCN4AP35499 AL162151.1-201ENST00000423922 561 ntTSL 4 BASIC16.49■□□□□ 0.23
SCN4AP35499 AC098820.2-201ENST00000457694 666 ntTSL 5 BASIC16.49■□□□□ 0.23
SCN4AP35499 PRSS46-201ENST00000463091 982 ntAPPRIS P1 TSL 4 BASIC16.49■□□□□ 0.23
SCN4AP35499 C10orf90-207ENST00000480379 1012 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
SCN4AP35499 PHBP18-201ENST00000546648 813 ntBASIC16.49■□□□□ 0.23
SCN4AP35499 AC026150.1-201ENST00000562992 701 ntTSL 5 BASIC16.49■□□□□ 0.23
SCN4AP35499 AC007223.1-201ENST00000564076 572 ntTSL 3 BASIC16.49■□□□□ 0.23
SCN4AP35499 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC16.49■□□□□ 0.23
SCN4AP35499 RN7SL134P-201ENST00000579756 303 ntBASIC16.49■□□□□ 0.23
SCN4AP35499 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SCN4AP35499 MYC-206ENST00000613283 1365 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SCN4AP35499 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC16.49■□□□□ 0.23
SCN4AP35499 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
SCN4AP35499 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
SCN4AP35499 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SCN4AP35499 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.48■□□□□ 0.23
SCN4AP35499 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.48■□□□□ 0.23
SCN4AP35499 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SCN4AP35499 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
SCN4AP35499 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SCN4AP35499 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SCN4AP35499 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SCN4AP35499 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SCN4AP35499 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
SCN4AP35499 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SCN4AP35499 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SCN4AP35499 RPLP1-202ENST00000357790 445 ntTSL 2 BASIC16.48■□□□□ 0.23
SCN4AP35499 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
SCN4AP35499 PPIL3-205ENST00000409449 756 ntTSL 5 BASIC16.48■□□□□ 0.23
SCN4AP35499 AC026884.1-201ENST00000418296 457 ntBASIC16.48■□□□□ 0.23
SCN4AP35499 AC011239.1-201ENST00000430988 584 ntTSL 4 BASIC16.48■□□□□ 0.23
SCN4AP35499 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SCN4AP35499 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC16.48■□□□□ 0.23
SCN4AP35499 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC16.48■□□□□ 0.23
SCN4AP35499 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC16.48■□□□□ 0.23
SCN4AP35499 MIR4326-201ENST00000582203 59 ntBASIC16.48■□□□□ 0.23
SCN4AP35499 PPY-202ENST00000587006 431 ntTSL 3 BASIC16.48■□□□□ 0.23
SCN4AP35499 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC16.48■□□□□ 0.23
SCN4AP35499 HIST1H3E-201ENST00000614911 462 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
SCN4AP35499 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SCN4AP35499 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SCN4AP35499 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
SCN4AP35499 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.48■□□□□ 0.23
SCN4AP35499 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SCN4AP35499 GTF2A1L-201ENST00000403751 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SCN4AP35499 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SCN4AP35499 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SCN4AP35499 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SCN4AP35499 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
SCN4AP35499 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SCN4AP35499 AL355500.1-201ENST00000439421 297 ntTSL 3 BASIC16.47■□□□□ 0.23
SCN4AP35499 C3orf84-203ENST00000545770 706 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
SCN4AP35499 TNFRSF10A-204ENST00000613472 978 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SCN4AP35499 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC16.47■□□□□ 0.23
SCN4AP35499 AC138627.1-201ENST00000641127 1257 ntBASIC16.47■□□□□ 0.23
SCN4AP35499 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SCN4AP35499 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.47■□□□□ 0.23
SCN4AP35499 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SCN4AP35499 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SCN4AP35499 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.47■□□□□ 0.23
SCN4AP35499 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SCN4AP35499 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SCN4AP35499 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC16.47■□□□□ 0.23
SCN4AP35499 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.47■□□□□ 0.23
SCN4AP35499 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
SCN4AP35499 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC16.47■□□□□ 0.23
SCN4AP35499 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC16.47■□□□□ 0.23
SCN4AP35499 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC16.47■□□□□ 0.23
SCN4AP35499 AL591499.1-201ENST00000307155 1153 ntBASIC16.47■□□□□ 0.23
SCN4AP35499 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC16.47■□□□□ 0.23
SCN4AP35499 NDUFB2P1-201ENST00000506966 295 ntBASIC16.47■□□□□ 0.23
SCN4AP35499 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC16.47■□□□□ 0.23
SCN4AP35499 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
SCN4AP35499 AC134878.2-201ENST00000620700 1265 ntBASIC16.47■□□□□ 0.23
SCN4AP35499 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
SCN4AP35499 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SCN4AP35499 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms