Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP2AO43633 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP2AO43633 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP2AO43633 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP2AO43633 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP2AO43633 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP2AO43633 ST20-AS1-201ENST00000560255 4223 ntBASIC16.3■□□□□ 0.2
CHMP2AO43633 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC16.3■□□□□ 0.2
CHMP2AO43633 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP2AO43633 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP2AO43633 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP2AO43633 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC16.3■□□□□ 0.2
CHMP2AO43633 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC16.3■□□□□ 0.2
CHMP2AO43633 KRT8P21-201ENST00000430398 1491 ntBASIC16.3■□□□□ 0.2
CHMP2AO43633 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CHMP2AO43633 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP2AO43633 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP2AO43633 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP2AO43633 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP2AO43633 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP2AO43633 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP2AO43633 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
CHMP2AO43633 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP2AO43633 XBP1P1-201ENST00000436573 652 ntBASIC16.3■□□□□ 0.2
CHMP2AO43633 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC16.3■□□□□ 0.2
CHMP2AO43633 ST13P19-201ENST00000442505 1124 ntBASIC16.3■□□□□ 0.2
CHMP2AO43633 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC16.3■□□□□ 0.2
CHMP2AO43633 TSACC-208ENST00000481479 741 ntTSL 2 BASIC16.3■□□□□ 0.2
CHMP2AO43633 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC16.3■□□□□ 0.2
CHMP2AO43633 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC16.3■□□□□ 0.2
CHMP2AO43633 IGHV3OR16-16-201ENST00000563644 343 ntBASIC16.3■□□□□ 0.2
CHMP2AO43633 PAM16-211ENST00000575848 518 ntTSL 3 BASIC16.3■□□□□ 0.2
CHMP2AO43633 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CHMP2AO43633 DRG2-220ENST00000583355 891 ntTSL 3 BASIC16.3■□□□□ 0.2
CHMP2AO43633 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CHMP2AO43633 AC100757.4-201ENST00000626934 759 ntBASIC16.3■□□□□ 0.2
CHMP2AO43633 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC16.3■□□□□ 0.2
CHMP2AO43633 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP2AO43633 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP2AO43633 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP2AO43633 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP2AO43633 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC16.3■□□□□ 0.2
CHMP2AO43633 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP2AO43633 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CHMP2AO43633 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP2AO43633 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CHMP2AO43633 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP2AO43633 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
CHMP2AO43633 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CHMP2AO43633 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP2AO43633 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC16.3■□□□□ 0.2
CHMP2AO43633 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC16.3■□□□□ 0.2
CHMP2AO43633 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC16.29■□□□□ 0.2
CHMP2AO43633 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CHMP2AO43633 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC16.29■□□□□ 0.2
CHMP2AO43633 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CHMP2AO43633 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.29■□□□□ 0.2
CHMP2AO43633 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CHMP2AO43633 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
CHMP2AO43633 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.29■□□□□ 0.2
CHMP2AO43633 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC16.29■□□□□ 0.2
CHMP2AO43633 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 SLC25A24P2-201ENST00000415059 510 ntBASIC16.29■□□□□ 0.2
CHMP2AO43633 AL161932.2-201ENST00000435436 679 ntBASIC16.29■□□□□ 0.2
CHMP2AO43633 TPI1-206ENST00000488464 791 ntTSL 5 BASIC16.29■□□□□ 0.2
CHMP2AO43633 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC16.29■□□□□ 0.2
CHMP2AO43633 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
CHMP2AO43633 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC16.29■□□□□ 0.2
CHMP2AO43633 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC16.29■□□□□ 0.2
CHMP2AO43633 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
CHMP2AO43633 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC16.29■□□□□ 0.2
CHMP2AO43633 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC16.29■□□□□ 0.2
CHMP2AO43633 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
CHMP2AO43633 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC16.29■□□□□ 0.2
CHMP2AO43633 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC16.29■□□□□ 0.2
CHMP2AO43633 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP2AO43633 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHMP2AO43633 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms