Protein–RNA interactions for Protein: Q9Y2W7

KCNIP3, Calsenilin, humanhuman

Predictions only

Length 256 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3Q9Y2W7 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 CENPM-205ENST00000404067 905 ntTSL 3 BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 CENPM-206ENST00000407253 818 ntTSL 2 BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 AP000344.2-201ENST00000512987 629 ntBASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 AC022616.1-201ENST00000518688 554 ntBASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 KRT126P-201ENST00000549467 1181 ntBASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 AC010336.2-201ENST00000564226 506 ntBASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 AC120114.3-201ENST00000611923 658 ntBASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 AC009093.7-201ENST00000623853 1223 ntBASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 OXR1-202ENST00000312046 4406 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 PPP6C-203ENST00000451402 4349 ntTSL 2 BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 GPR179-204ENST00000621958 7983 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 CACNA1G-218ENST00000507510 7014 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 AL157996.1-201ENST00000624684 2299 ntBASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 AC072061.1-201ENST00000569710 2234 ntBASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC12.22□□□□□ -0.45
KCNIP3Q9Y2W7 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 COL3A1-201ENST00000304636 5543 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 KCNA1-201ENST00000382545 7997 ntAPPRIS P1 TSL 4 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 DNM1P41-201ENST00000623634 3350 ntBASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 ZBTB49-201ENST00000337872 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 DRD5P1-201ENST00000456605 1438 ntBASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 NR3C2-203ENST00000358102 5893 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 DDX54-201ENST00000306014 4377 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 USP40-201ENST00000251722 5692 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 ARFGEF1-201ENST00000262215 7225 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 STOM-202ENST00000347359 870 ntTSL 2 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 MIR940-201ENST00000401276 94 ntBASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 TEX28P1-201ENST00000613479 1221 ntBASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 5S_rRNA.22-201ENST00000614916 106 ntBASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 TEX28P2-201ENST00000617764 1221 ntBASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 RALGPS1-201ENST00000259351 6336 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC12.21□□□□□ -0.45
KCNIP3Q9Y2W7 AGAP10P-201ENST00000454844 2418 ntBASIC12.21□□□□□ -0.46
KCNIP3Q9Y2W7 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
KCNIP3Q9Y2W7 AL365181.3-201ENST00000605886 3222 ntBASIC12.21□□□□□ -0.46
KCNIP3Q9Y2W7 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
KCNIP3Q9Y2W7 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.46
KCNIP3Q9Y2W7 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
KCNIP3Q9Y2W7 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
KCNIP3Q9Y2W7 CLPX-201ENST00000300107 4695 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms