Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 AC012441.2-201ENST00000444843 739 ntBASIC13.87□□□□□ -0.19
BRF2Q9HAW0 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 AC104989.1-201ENST00000519711 778 ntBASIC13.87□□□□□ -0.19
BRF2Q9HAW0 HNRNPA1P36-201ENST00000521313 955 ntBASIC13.87□□□□□ -0.19
BRF2Q9HAW0 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.87□□□□□ -0.19
BRF2Q9HAW0 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 BAP1-211ENST00000615113 489 ntBASIC13.87□□□□□ -0.19
BRF2Q9HAW0 WNT11-204ENST00000621122 789 ntTSL 5 BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 Z98259.2-201ENST00000641583 609 ntBASIC13.87□□□□□ -0.19
BRF2Q9HAW0 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC13.87□□□□□ -0.19
BRF2Q9HAW0 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 AC015818.8-201ENST00000587907 1519 ntBASIC13.86□□□□□ -0.19
BRF2Q9HAW0 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 DUX4L45-201ENST00000566406 1057 ntBASIC13.86□□□□□ -0.19
BRF2Q9HAW0 PAM16-211ENST00000575848 518 ntTSL 3 BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 CETP-203ENST00000566128 1733 ntTSL 5 BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
BRF2Q9HAW0 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
BRF2Q9HAW0 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
BRF2Q9HAW0 FUK-202ENST00000378912 3925 ntTSL 2 BASIC13.85□□□□□ -0.19
BRF2Q9HAW0 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
BRF2Q9HAW0 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC13.85□□□□□ -0.19
BRF2Q9HAW0 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
BRF2Q9HAW0 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
BRF2Q9HAW0 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC13.85□□□□□ -0.19
BRF2Q9HAW0 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms