Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 MESTP3-201ENST00000503460 968 ntBASIC4.54□□□□□ -1.68
SYNE1Q8NF91 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AP001002.3-201ENST00000623482 206 ntBASIC4.54□□□□□ -1.68
SYNE1Q8NF91 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 ARHGAP12-203ENST00000375245 4958 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AP1G1-218ENST00000569748 4554 ntAPPRIS P3 TSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AC069224.1-201ENST00000566372 1715 ntBASIC4.54□□□□□ -1.68
SYNE1Q8NF91 TXNDC16-201ENST00000281741 4564 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 PPT1-215ENST00000641471 2368 ntBASIC4.54□□□□□ -1.68
SYNE1Q8NF91 MIR769-201ENST00000390225 118 ntBASIC4.54□□□□□ -1.68
SYNE1Q8NF91 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 RN7SL555P-201ENST00000584742 339 ntBASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 TNK2-208ENST00000428187 4235 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AC019205.2-203ENST00000421315 3362 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 KRT8P14-201ENST00000414254 1442 ntBASIC4.54□□□□□ -1.68
SYNE1Q8NF91 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 PARP10-205ENST00000525773 3404 ntAPPRIS ALT2 TSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 PCDHA6-201ENST00000378126 3267 ntBASIC4.54□□□□□ -1.68
SYNE1Q8NF91 PARVG-202ENST00000415224 999 ntTSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 SSR4P1-203ENST00000599569 2260 ntBASIC4.54□□□□□ -1.68
SYNE1Q8NF91 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 LINC01749-202ENST00000607802 3408 ntTSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 RN7SKP214-201ENST00000364208 315 ntBASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AK6-201ENST00000380818 1183 ntTSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 IGF1-203ENST00000392904 761 ntTSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 RN7SL181P-201ENST00000462921 277 ntBASIC4.54□□□□□ -1.68
SYNE1Q8NF91 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 NLGN3-202ENST00000374051 3913 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 ABI1-212ENST00000490841 3188 ntTSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AL354877.1-201ENST00000424412 413 ntBASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AL023803.2-201ENST00000620080 638 ntBASIC4.54□□□□□ -1.68
SYNE1Q8NF91 GPR39-203ENST00000622084 900 ntTSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AC004899.1-201ENST00000424687 1714 ntBASIC4.54□□□□□ -1.68
SYNE1Q8NF91 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms