Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
VPS13CQ709C8 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
VPS13CQ709C8 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
VPS13CQ709C8 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
VPS13CQ709C8 AC007686.3-201ENST00000619017 3487 ntBASIC11.67□□□□□ -0.54
VPS13CQ709C8 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
VPS13CQ709C8 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC11.67□□□□□ -0.54
VPS13CQ709C8 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC11.67□□□□□ -0.54
VPS13CQ709C8 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
VPS13CQ709C8 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
VPS13CQ709C8 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC11.67□□□□□ -0.54
VPS13CQ709C8 RHOQP2-201ENST00000449922 579 ntBASIC11.67□□□□□ -0.54
VPS13CQ709C8 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC11.67□□□□□ -0.54
VPS13CQ709C8 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
VPS13CQ709C8 SNORD3B-1-201ENST00000577988 758 ntBASIC11.67□□□□□ -0.54
VPS13CQ709C8 TARM1-202ENST00000616041 1218 ntAPPRIS ALT2 TSL 2 BASIC11.67□□□□□ -0.54
VPS13CQ709C8 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
VPS13CQ709C8 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
VPS13CQ709C8 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
VPS13CQ709C8 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
VPS13CQ709C8 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC11.67□□□□□ -0.54
VPS13CQ709C8 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
VPS13CQ709C8 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
VPS13CQ709C8 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
VPS13CQ709C8 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
VPS13CQ709C8 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
VPS13CQ709C8 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC11.67□□□□□ -0.54
VPS13CQ709C8 HLA-DMA-202ENST00000395303 1007 ntBASIC11.67□□□□□ -0.54
VPS13CQ709C8 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC11.67□□□□□ -0.54
VPS13CQ709C8 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC11.67□□□□□ -0.54
VPS13CQ709C8 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC11.67□□□□□ -0.54
VPS13CQ709C8 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
VPS13CQ709C8 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
VPS13CQ709C8 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
VPS13CQ709C8 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
VPS13CQ709C8 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 FAM21EP-201ENST00000417804 985 ntBASIC11.66□□□□□ -0.54
VPS13CQ709C8 AC078882.1-201ENST00000436132 416 ntTSL 2 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 AL356000.1-201ENST00000441073 1238 ntBASIC11.66□□□□□ -0.54
VPS13CQ709C8 DPY19L2P4-201ENST00000479881 442 ntBASIC11.66□□□□□ -0.54
VPS13CQ709C8 MIR2278-201ENST00000516344 96 ntBASIC11.66□□□□□ -0.54
VPS13CQ709C8 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 EMP3-204ENST00000596315 761 ntTSL 2 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 AC020922.4-201ENST00000621389 339 ntBASIC11.66□□□□□ -0.54
VPS13CQ709C8 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 LINC00552-201ENST00000625151 2579 ntBASIC11.66□□□□□ -0.54
VPS13CQ709C8 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 BX088651.3-201ENST00000418155 352 ntBASIC11.66□□□□□ -0.54
VPS13CQ709C8 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 AC254633.1-201ENST00000606790 345 ntBASIC11.66□□□□□ -0.54
VPS13CQ709C8 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 CFL1P6-201ENST00000400899 494 ntBASIC11.66□□□□□ -0.54
VPS13CQ709C8 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
VPS13CQ709C8 GALP-202ENST00000440823 889 ntTSL 5 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 HNRNPA1P10-201ENST00000444945 962 ntBASIC11.66□□□□□ -0.54
VPS13CQ709C8 AC008026.2-201ENST00000495438 348 ntBASIC11.66□□□□□ -0.54
VPS13CQ709C8 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 RN7SL455P-201ENST00000580629 282 ntBASIC11.66□□□□□ -0.54
VPS13CQ709C8 MRPS31P4-202ENST00000613769 583 ntTSL 4 BASIC11.66□□□□□ -0.54
VPS13CQ709C8 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC11.65□□□□□ -0.54
VPS13CQ709C8 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
VPS13CQ709C8 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC11.65□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms