Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC13.35□□□□□ -0.27
MSX1P28360 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 AP000240.1-201ENST00000609910 452 ntBASIC13.35□□□□□ -0.27
MSX1P28360 CU633904.3-201ENST00000624042 1029 ntBASIC13.35□□□□□ -0.27
MSX1P28360 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.35□□□□□ -0.27
MSX1P28360 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
MSX1P28360 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
MSX1P28360 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC13.35□□□□□ -0.27
MSX1P28360 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC13.35□□□□□ -0.27
MSX1P28360 AC007686.3-201ENST00000619017 3487 ntBASIC13.35□□□□□ -0.27
MSX1P28360 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.35□□□□□ -0.27
MSX1P28360 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC13.35□□□□□ -0.27
MSX1P28360 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC13.35□□□□□ -0.27
MSX1P28360 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.35□□□□□ -0.27
MSX1P28360 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
MSX1P28360 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC13.35□□□□□ -0.27
MSX1P28360 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 R3HDM2P2-201ENST00000401880 2116 ntBASIC13.34□□□□□ -0.27
MSX1P28360 AC090505.1-201ENST00000430515 1834 ntBASIC13.34□□□□□ -0.27
MSX1P28360 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
MSX1P28360 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 KRT8P29-201ENST00000420409 1371 ntBASIC13.34□□□□□ -0.27
MSX1P28360 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC13.34□□□□□ -0.27
MSX1P28360 CYP46A4P-201ENST00000414953 267 ntBASIC13.34□□□□□ -0.27
MSX1P28360 HINT2P1-201ENST00000419438 481 ntBASIC13.34□□□□□ -0.27
MSX1P28360 AL008707.1-201ENST00000422498 534 ntBASIC13.34□□□□□ -0.27
MSX1P28360 NKAIN1P1-201ENST00000435754 582 ntBASIC13.34□□□□□ -0.27
MSX1P28360 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC13.34□□□□□ -0.27
MSX1P28360 AC021723.1-201ENST00000486306 515 ntBASIC13.34□□□□□ -0.27
MSX1P28360 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC13.34□□□□□ -0.27
MSX1P28360 IGHVIII-5-2-201ENST00000522505 261 ntBASIC13.34□□□□□ -0.27
MSX1P28360 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC13.34□□□□□ -0.27
MSX1P28360 RBM8B-201ENST00000555532 525 ntBASIC13.34□□□□□ -0.27
MSX1P28360 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC13.34□□□□□ -0.27
MSX1P28360 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC13.34□□□□□ -0.27
MSX1P28360 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC13.34□□□□□ -0.27
MSX1P28360 BNIP3P41-202ENST00000616656 861 ntBASIC13.34□□□□□ -0.27
MSX1P28360 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
MSX1P28360 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC13.34□□□□□ -0.27
MSX1P28360 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC13.34□□□□□ -0.27
MSX1P28360 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 AC244394.1-201ENST00000435000 1665 ntBASIC13.34□□□□□ -0.27
MSX1P28360 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
MSX1P28360 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
MSX1P28360 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.27
MSX1P28360 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.27
MSX1P28360 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
MSX1P28360 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
MSX1P28360 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
MSX1P28360 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
MSX1P28360 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.27
MSX1P28360 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.27
MSX1P28360 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC13.33□□□□□ -0.27
MSX1P28360 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
MSX1P28360 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC13.33□□□□□ -0.27
MSX1P28360 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
MSX1P28360 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC13.33□□□□□ -0.28
MSX1P28360 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
MSX1P28360 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.28
MSX1P28360 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
MSX1P28360 LRTM1-201ENST00000273286 1423 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
MSX1P28360 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
MSX1P28360 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC13.33□□□□□ -0.28
MSX1P28360 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
MSX1P28360 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC13.33□□□□□ -0.28
MSX1P28360 SMS-201ENST00000379404 1174 ntTSL 3 BASIC13.33□□□□□ -0.28
MSX1P28360 GGCT-203ENST00000409144 836 ntTSL 2 BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms