Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC13.26□□□□□ -0.29
HOXD4P09016 CCNC-217ENST00000523985 958 ntTSL 2 BASIC13.26□□□□□ -0.29
HOXD4P09016 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC13.26□□□□□ -0.29
HOXD4P09016 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC13.26□□□□□ -0.29
HOXD4P09016 AL161670.2-201ENST00000557650 1227 ntBASIC13.26□□□□□ -0.29
HOXD4P09016 MIR4706-201ENST00000582134 82 ntBASIC13.26□□□□□ -0.29
HOXD4P09016 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC13.26□□□□□ -0.29
HOXD4P09016 AC003102.2-201ENST00000589195 1469 ntBASIC13.26□□□□□ -0.29
HOXD4P09016 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
HOXD4P09016 AL132994.2-201ENST00000603120 687 ntBASIC13.26□□□□□ -0.29
HOXD4P09016 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC13.26□□□□□ -0.29
HOXD4P09016 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
HOXD4P09016 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.26□□□□□ -0.29
HOXD4P09016 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
HOXD4P09016 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC13.26□□□□□ -0.29
HOXD4P09016 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 SLC9A7P1-202ENST00000556476 2239 ntBASIC13.25□□□□□ -0.29
HOXD4P09016 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
HOXD4P09016 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXD4P09016 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXD4P09016 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC13.25□□□□□ -0.29
HOXD4P09016 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
HOXD4P09016 SALL4P5-201ENST00000419001 1760 ntBASIC13.25□□□□□ -0.29
HOXD4P09016 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXD4P09016 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
HOXD4P09016 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
HOXD4P09016 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
HOXD4P09016 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXD4P09016 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC13.25□□□□□ -0.29
HOXD4P09016 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC13.25□□□□□ -0.29
HOXD4P09016 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXD4P09016 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC13.25□□□□□ -0.29
HOXD4P09016 PTPA-217ENST00000434095 870 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXD4P09016 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC13.25□□□□□ -0.29
HOXD4P09016 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 AC104073.2-201ENST00000453737 312 ntBASIC13.25□□□□□ -0.29
HOXD4P09016 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXD4P09016 AC125604.1-201ENST00000496255 707 ntBASIC13.25□□□□□ -0.29
HOXD4P09016 SUPT4H1P2-201ENST00000501248 353 ntBASIC13.25□□□□□ -0.29
HOXD4P09016 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC13.25□□□□□ -0.29
HOXD4P09016 SDHD-202ENST00000525291 790 ntTSL 3 BASIC13.25□□□□□ -0.29
HOXD4P09016 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXD4P09016 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC13.25□□□□□ -0.29
HOXD4P09016 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC13.25□□□□□ -0.29
HOXD4P09016 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC13.25□□□□□ -0.29
HOXD4P09016 AC027601.3-201ENST00000622907 509 ntBASIC13.25□□□□□ -0.29
HOXD4P09016 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 AGAP7P-201ENST00000582299 2062 ntBASIC13.25□□□□□ -0.29
HOXD4P09016 AGAP14-201ENST00000624701 2060 ntBASIC13.25□□□□□ -0.29
HOXD4P09016 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
HOXD4P09016 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD4P09016 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 SFRP1-202ENST00000379845 3873 ntTSL 2 BASIC13.24□□□□□ -0.29
HOXD4P09016 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC13.24□□□□□ -0.29
HOXD4P09016 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC13.24□□□□□ -0.29
HOXD4P09016 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
HOXD4P09016 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
HOXD4P09016 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC13.24□□□□□ -0.29
HOXD4P09016 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.24□□□□□ -0.29
HOXD4P09016 RN7SKP214-201ENST00000364208 315 ntBASIC13.24□□□□□ -0.29
HOXD4P09016 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC13.24□□□□□ -0.29
HOXD4P09016 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 MSRA-203ENST00000441698 788 ntTSL 2 BASIC13.24□□□□□ -0.29
HOXD4P09016 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms