Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DOAP06340 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DOAP06340 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
HLA-DOAP06340 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC17■□□□□ 0.31
HLA-DOAP06340 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 RPSAP31-201ENST00000416648 895 ntBASIC17■□□□□ 0.31
HLA-DOAP06340 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 RPL17P11-201ENST00000417593 544 ntBASIC17■□□□□ 0.31
HLA-DOAP06340 OR8T1P-201ENST00000421347 918 ntBASIC17■□□□□ 0.31
HLA-DOAP06340 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
HLA-DOAP06340 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
HLA-DOAP06340 RN7SL8P-201ENST00000461771 266 ntBASIC17■□□□□ 0.31
HLA-DOAP06340 AC104784.1-201ENST00000473096 294 ntBASIC17■□□□□ 0.31
HLA-DOAP06340 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC17■□□□□ 0.31
HLA-DOAP06340 AC135983.4-201ENST00000564116 1262 ntBASIC17■□□□□ 0.31
HLA-DOAP06340 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
HLA-DOAP06340 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC17■□□□□ 0.31
HLA-DOAP06340 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC17■□□□□ 0.31
HLA-DOAP06340 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC17■□□□□ 0.31
HLA-DOAP06340 MIR6727-201ENST00000620702 65 ntBASIC17■□□□□ 0.31
HLA-DOAP06340 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC17■□□□□ 0.31
HLA-DOAP06340 HLA-DQB1-202ENST00000399079 1501 ntBASIC17■□□□□ 0.31
HLA-DOAP06340 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC17■□□□□ 0.31
HLA-DOAP06340 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
HLA-DOAP06340 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
HLA-DOAP06340 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DOAP06340 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DOAP06340 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC16.99■□□□□ 0.31
HLA-DOAP06340 AC092978.1-202ENST00000637590 1327 ntBASIC16.99■□□□□ 0.31
HLA-DOAP06340 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.99■□□□□ 0.31
HLA-DOAP06340 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC16.99■□□□□ 0.31
HLA-DOAP06340 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
HLA-DOAP06340 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC16.99■□□□□ 0.31
HLA-DOAP06340 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DOAP06340 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
HLA-DOAP06340 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
HLA-DOAP06340 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DOAP06340 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
HLA-DOAP06340 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DOAP06340 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC16.99■□□□□ 0.31
HLA-DOAP06340 ORAOV1P1-201ENST00000503108 395 ntBASIC16.99■□□□□ 0.31
HLA-DOAP06340 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC16.99■□□□□ 0.31
HLA-DOAP06340 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DOAP06340 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DOAP06340 POLD4-208ENST00000532830 904 ntTSL 3 BASIC16.99■□□□□ 0.31
HLA-DOAP06340 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
HLA-DOAP06340 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC16.99■□□□□ 0.31
HLA-DOAP06340 ELP5-212ENST00000574255 671 ntTSL 2 BASIC16.99■□□□□ 0.31
HLA-DOAP06340 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC16.99■□□□□ 0.31
HLA-DOAP06340 RN7SL736P-201ENST00000613111 269 ntBASIC16.99■□□□□ 0.31
HLA-DOAP06340 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
HLA-DOAP06340 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DOAP06340 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DOAP06340 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DOAP06340 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DOAP06340 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DOAP06340 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.99■□□□□ 0.31
HLA-DOAP06340 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DOAP06340 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DOAP06340 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC16.98■□□□□ 0.31
HLA-DOAP06340 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DOAP06340 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.98■□□□□ 0.31
HLA-DOAP06340 CCT8L1P-201ENST00000465400 1674 ntBASIC16.98■□□□□ 0.31
HLA-DOAP06340 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DOAP06340 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DOAP06340 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC16.98■□□□□ 0.31
HLA-DOAP06340 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DOAP06340 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DOAP06340 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DOAP06340 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DOAP06340 MIR645-201ENST00000385283 94 ntBASIC16.98■□□□□ 0.31
HLA-DOAP06340 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
HLA-DOAP06340 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DOAP06340 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC16.98■□□□□ 0.31
HLA-DOAP06340 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC16.98■□□□□ 0.31
HLA-DOAP06340 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC16.98■□□□□ 0.31
HLA-DOAP06340 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DOAP06340 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC16.98■□□□□ 0.31
HLA-DOAP06340 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC16.98■□□□□ 0.31
HLA-DOAP06340 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC16.98■□□□□ 0.31
HLA-DOAP06340 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms