Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
C9orf40Q8IXQ3 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
C9orf40Q8IXQ3 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
C9orf40Q8IXQ3 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
C9orf40Q8IXQ3 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
C9orf40Q8IXQ3 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
C9orf40Q8IXQ3 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.02■□□□□ 0.96
C9orf40Q8IXQ3 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
C9orf40Q8IXQ3 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
C9orf40Q8IXQ3 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
C9orf40Q8IXQ3 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
C9orf40Q8IXQ3 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
C9orf40Q8IXQ3 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
C9orf40Q8IXQ3 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
C9orf40Q8IXQ3 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
C9orf40Q8IXQ3 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
C9orf40Q8IXQ3 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
C9orf40Q8IXQ3 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
C9orf40Q8IXQ3 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
C9orf40Q8IXQ3 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.01■□□□□ 0.95
C9orf40Q8IXQ3 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
C9orf40Q8IXQ3 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
C9orf40Q8IXQ3 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
C9orf40Q8IXQ3 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21■□□□□ 0.95
C9orf40Q8IXQ3 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
C9orf40Q8IXQ3 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
C9orf40Q8IXQ3 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21■□□□□ 0.95
C9orf40Q8IXQ3 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21■□□□□ 0.95
C9orf40Q8IXQ3 MIR4466-201ENST00000606121 54 ntBASIC21■□□□□ 0.95
C9orf40Q8IXQ3 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21■□□□□ 0.95
C9orf40Q8IXQ3 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21■□□□□ 0.95
C9orf40Q8IXQ3 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
C9orf40Q8IXQ3 AC009102.2-201ENST00000606772 1639 ntBASIC21■□□□□ 0.95
C9orf40Q8IXQ3 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.99■□□□□ 0.95
C9orf40Q8IXQ3 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
C9orf40Q8IXQ3 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
C9orf40Q8IXQ3 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
C9orf40Q8IXQ3 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
C9orf40Q8IXQ3 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
C9orf40Q8IXQ3 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
C9orf40Q8IXQ3 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
C9orf40Q8IXQ3 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.99■□□□□ 0.95
C9orf40Q8IXQ3 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
C9orf40Q8IXQ3 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
C9orf40Q8IXQ3 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.99■□□□□ 0.95
C9orf40Q8IXQ3 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.99■□□□□ 0.95
C9orf40Q8IXQ3 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
C9orf40Q8IXQ3 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.99■□□□□ 0.95
C9orf40Q8IXQ3 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
C9orf40Q8IXQ3 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
C9orf40Q8IXQ3 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
C9orf40Q8IXQ3 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
C9orf40Q8IXQ3 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.98■□□□□ 0.95
C9orf40Q8IXQ3 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.98■□□□□ 0.95
C9orf40Q8IXQ3 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
C9orf40Q8IXQ3 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
C9orf40Q8IXQ3 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
C9orf40Q8IXQ3 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
C9orf40Q8IXQ3 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
C9orf40Q8IXQ3 AC008406.3-201ENST00000620001 1374 ntBASIC20.97■□□□□ 0.95
C9orf40Q8IXQ3 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
C9orf40Q8IXQ3 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
C9orf40Q8IXQ3 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
C9orf40Q8IXQ3 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
C9orf40Q8IXQ3 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
C9orf40Q8IXQ3 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
C9orf40Q8IXQ3 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
C9orf40Q8IXQ3 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.97■□□□□ 0.95
C9orf40Q8IXQ3 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.97■□□□□ 0.95
C9orf40Q8IXQ3 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
C9orf40Q8IXQ3 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
C9orf40Q8IXQ3 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
C9orf40Q8IXQ3 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
C9orf40Q8IXQ3 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.96■□□□□ 0.95
C9orf40Q8IXQ3 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
C9orf40Q8IXQ3 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.96■□□□□ 0.95
C9orf40Q8IXQ3 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
C9orf40Q8IXQ3 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.95■□□□□ 0.95
C9orf40Q8IXQ3 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
C9orf40Q8IXQ3 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
C9orf40Q8IXQ3 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
C9orf40Q8IXQ3 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.95■□□□□ 0.94
C9orf40Q8IXQ3 AL136116.3-201ENST00000402907 1138 ntBASIC20.95■□□□□ 0.94
C9orf40Q8IXQ3 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
C9orf40Q8IXQ3 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
C9orf40Q8IXQ3 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
C9orf40Q8IXQ3 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
C9orf40Q8IXQ3 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
C9orf40Q8IXQ3 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
C9orf40Q8IXQ3 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
C9orf40Q8IXQ3 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.94■□□□□ 0.94
C9orf40Q8IXQ3 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
C9orf40Q8IXQ3 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
C9orf40Q8IXQ3 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.94■□□□□ 0.94
C9orf40Q8IXQ3 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
C9orf40Q8IXQ3 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.94■□□□□ 0.94
C9orf40Q8IXQ3 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
C9orf40Q8IXQ3 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
C9orf40Q8IXQ3 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
C9orf40Q8IXQ3 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms