Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC25.37■■□□□ 1.65
CCDC60Q8IWA6 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
CCDC60Q8IWA6 LINC01124-201ENST00000409786 2117 ntBASIC25.37■■□□□ 1.65
CCDC60Q8IWA6 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
CCDC60Q8IWA6 PBX2P1-201ENST00000493219 1291 ntBASIC25.37■■□□□ 1.65
CCDC60Q8IWA6 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC25.37■■□□□ 1.65
CCDC60Q8IWA6 AL136162.1-201ENST00000607711 1078 ntBASIC25.37■■□□□ 1.65
CCDC60Q8IWA6 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
CCDC60Q8IWA6 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC25.37■■□□□ 1.65
CCDC60Q8IWA6 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
CCDC60Q8IWA6 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC25.36■■□□□ 1.65
CCDC60Q8IWA6 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CCDC60Q8IWA6 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
CCDC60Q8IWA6 AC099791.2-201ENST00000605725 427 ntBASIC25.36■■□□□ 1.65
CCDC60Q8IWA6 EI24-213ENST00000618552 1747 ntTSL 5 BASIC25.36■■□□□ 1.65
CCDC60Q8IWA6 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC25.36■■□□□ 1.65
CCDC60Q8IWA6 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC25.36■■□□□ 1.65
CCDC60Q8IWA6 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
CCDC60Q8IWA6 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
CCDC60Q8IWA6 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC60Q8IWA6 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC25.35■■□□□ 1.65
CCDC60Q8IWA6 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC60Q8IWA6 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC60Q8IWA6 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC25.35■■□□□ 1.65
CCDC60Q8IWA6 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC25.35■■□□□ 1.65
CCDC60Q8IWA6 AC005837.3-201ENST00000612163 286 ntBASIC25.35■■□□□ 1.65
CCDC60Q8IWA6 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC60Q8IWA6 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC60Q8IWA6 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC60Q8IWA6 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC60Q8IWA6 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC60Q8IWA6 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC60Q8IWA6 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
CCDC60Q8IWA6 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC60Q8IWA6 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC60Q8IWA6 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC60Q8IWA6 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC25.34■■□□□ 1.65
CCDC60Q8IWA6 AC024257.2-201ENST00000549699 147 ntBASIC25.34■■□□□ 1.65
CCDC60Q8IWA6 AC133561.4-201ENST00000566112 224 ntBASIC25.34■■□□□ 1.65
CCDC60Q8IWA6 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC60Q8IWA6 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC60Q8IWA6 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC60Q8IWA6 AC135279.3-201ENST00000610945 1311 ntBASIC25.34■■□□□ 1.65
CCDC60Q8IWA6 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
CCDC60Q8IWA6 LINC00543-201ENST00000567234 1845 ntBASIC25.33■■□□□ 1.65
CCDC60Q8IWA6 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
CCDC60Q8IWA6 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC25.33■■□□□ 1.65
CCDC60Q8IWA6 NKILA-201ENST00000613231 537 ntTSL 4 BASIC25.33■■□□□ 1.65
CCDC60Q8IWA6 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
CCDC60Q8IWA6 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
CCDC60Q8IWA6 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC25.32■■□□□ 1.64
CCDC60Q8IWA6 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC60Q8IWA6 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
CCDC60Q8IWA6 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
CCDC60Q8IWA6 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC25.32■■□□□ 1.64
CCDC60Q8IWA6 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC25.32■■□□□ 1.64
CCDC60Q8IWA6 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC60Q8IWA6 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC25.32■■□□□ 1.64
CCDC60Q8IWA6 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC60Q8IWA6 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CCDC60Q8IWA6 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CCDC60Q8IWA6 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
CCDC60Q8IWA6 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CCDC60Q8IWA6 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC25.31■■□□□ 1.64
CCDC60Q8IWA6 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC25.31■■□□□ 1.64
CCDC60Q8IWA6 AL031432.3-201ENST00000607698 485 ntBASIC25.31■■□□□ 1.64
CCDC60Q8IWA6 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CCDC60Q8IWA6 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
CCDC60Q8IWA6 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC25.31■■□□□ 1.64
CCDC60Q8IWA6 SYT6-210ENST00000641643 1587 ntBASIC25.31■■□□□ 1.64
CCDC60Q8IWA6 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CCDC60Q8IWA6 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
CCDC60Q8IWA6 SERBP1P1-201ENST00000396021 1160 ntBASIC25.3■■□□□ 1.64
CCDC60Q8IWA6 DUX4L19-201ENST00000557448 1267 ntBASIC25.3■■□□□ 1.64
CCDC60Q8IWA6 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC25.3■■□□□ 1.64
CCDC60Q8IWA6 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC25.3■■□□□ 1.64
CCDC60Q8IWA6 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CCDC60Q8IWA6 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC25.3■■□□□ 1.64
CCDC60Q8IWA6 AC141586.4-201ENST00000624558 1573 ntBASIC25.3■■□□□ 1.64
CCDC60Q8IWA6 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
CCDC60Q8IWA6 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC60Q8IWA6 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC25.29■■□□□ 1.64
CCDC60Q8IWA6 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC25.29■■□□□ 1.64
CCDC60Q8IWA6 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
CCDC60Q8IWA6 AC006455.2-201ENST00000429931 906 ntBASIC25.29■■□□□ 1.64
CCDC60Q8IWA6 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC25.29■■□□□ 1.64
CCDC60Q8IWA6 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC25.29■■□□□ 1.64
CCDC60Q8IWA6 SF1-220ENST00000626028 704 ntTSL 2 BASIC25.29■■□□□ 1.64
CCDC60Q8IWA6 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC60Q8IWA6 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC60Q8IWA6 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC60Q8IWA6 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC60Q8IWA6 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
CCDC60Q8IWA6 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC60Q8IWA6 AC004812.2-201ENST00000611079 2094 ntBASIC25.28■■□□□ 1.64
CCDC60Q8IWA6 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC60Q8IWA6 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC60Q8IWA6 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC25.28■■□□□ 1.64
CCDC60Q8IWA6 AC092171.4-201ENST00000609130 632 ntBASIC25.28■■□□□ 1.64
CCDC60Q8IWA6 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC25.28■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms