Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
SHFQ7M4L6 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
SHFQ7M4L6 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.42■□□□□ 0.86
SHFQ7M4L6 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.42■□□□□ 0.86
SHFQ7M4L6 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHFQ7M4L6 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHFQ7M4L6 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHFQ7M4L6 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHFQ7M4L6 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.42■□□□□ 0.86
SHFQ7M4L6 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
SHFQ7M4L6 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHFQ7M4L6 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHFQ7M4L6 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
SHFQ7M4L6 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHFQ7M4L6 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHFQ7M4L6 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHFQ7M4L6 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.41■□□□□ 0.86
SHFQ7M4L6 RARRES2P2-201ENST00000394842 485 ntBASIC20.41■□□□□ 0.86
SHFQ7M4L6 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHFQ7M4L6 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SHFQ7M4L6 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHFQ7M4L6 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHFQ7M4L6 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHFQ7M4L6 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SHFQ7M4L6 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHFQ7M4L6 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHFQ7M4L6 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.4■□□□□ 0.86
SHFQ7M4L6 DUX4L9-201ENST00000449051 1259 ntBASIC20.4■□□□□ 0.86
SHFQ7M4L6 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
SHFQ7M4L6 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SHFQ7M4L6 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHFQ7M4L6 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SHFQ7M4L6 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SHFQ7M4L6 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SHFQ7M4L6 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SHFQ7M4L6 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SHFQ7M4L6 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.39■□□□□ 0.85
SHFQ7M4L6 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHFQ7M4L6 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
SHFQ7M4L6 AL161729.1-201ENST00000604104 1402 ntBASIC20.39■□□□□ 0.85
SHFQ7M4L6 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.85
SHFQ7M4L6 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHFQ7M4L6 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC20.39■□□□□ 0.85
SHFQ7M4L6 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC20.39■□□□□ 0.85
SHFQ7M4L6 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC20.39■□□□□ 0.85
SHFQ7M4L6 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC20.39■□□□□ 0.85
SHFQ7M4L6 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHFQ7M4L6 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHFQ7M4L6 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.38■□□□□ 0.85
SHFQ7M4L6 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHFQ7M4L6 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHFQ7M4L6 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHFQ7M4L6 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SHFQ7M4L6 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHFQ7M4L6 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHFQ7M4L6 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHFQ7M4L6 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.37■□□□□ 0.85
SHFQ7M4L6 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHFQ7M4L6 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHFQ7M4L6 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
SHFQ7M4L6 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHFQ7M4L6 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC20.37■□□□□ 0.85
SHFQ7M4L6 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHFQ7M4L6 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
SHFQ7M4L6 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHFQ7M4L6 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.37■□□□□ 0.85
SHFQ7M4L6 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHFQ7M4L6 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
SHFQ7M4L6 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHFQ7M4L6 GUSBP5-202ENST00000510805 1989 ntBASIC20.36■□□□□ 0.85
SHFQ7M4L6 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SHFQ7M4L6 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SHFQ7M4L6 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHFQ7M4L6 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHFQ7M4L6 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SHFQ7M4L6 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHFQ7M4L6 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.36■□□□□ 0.85
SHFQ7M4L6 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.36■□□□□ 0.85
SHFQ7M4L6 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SHFQ7M4L6 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.35■□□□□ 0.85
SHFQ7M4L6 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.35■□□□□ 0.85
SHFQ7M4L6 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHFQ7M4L6 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHFQ7M4L6 LONRF2P2-201ENST00000439212 571 ntBASIC20.35■□□□□ 0.85
SHFQ7M4L6 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.35■□□□□ 0.85
SHFQ7M4L6 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.35■□□□□ 0.85
SHFQ7M4L6 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHFQ7M4L6 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SHFQ7M4L6 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHFQ7M4L6 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHFQ7M4L6 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SHFQ7M4L6 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.34■□□□□ 0.85
SHFQ7M4L6 HSD17B1P1-201ENST00000590052 955 ntBASIC20.34■□□□□ 0.85
SHFQ7M4L6 U85056.1-201ENST00000616429 682 ntBASIC20.34■□□□□ 0.85
SHFQ7M4L6 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHFQ7M4L6 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHFQ7M4L6 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHFQ7M4L6 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.34■□□□□ 0.85
SHFQ7M4L6 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHFQ7M4L6 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 128.7 ms