Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC22.61■■□□□ 1.21
LRRK1Q38SD2 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
LRRK1Q38SD2 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
LRRK1Q38SD2 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
LRRK1Q38SD2 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
LRRK1Q38SD2 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
LRRK1Q38SD2 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC22.6■■□□□ 1.21
LRRK1Q38SD2 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
LRRK1Q38SD2 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
LRRK1Q38SD2 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
LRRK1Q38SD2 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
LRRK1Q38SD2 ABCB10P4-201ENST00000566803 2184 ntBASIC22.59■■□□□ 1.21
LRRK1Q38SD2 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
LRRK1Q38SD2 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
LRRK1Q38SD2 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
LRRK1Q38SD2 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
LRRK1Q38SD2 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
LRRK1Q38SD2 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC22.59■■□□□ 1.21
LRRK1Q38SD2 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC22.58■■□□□ 1.21
LRRK1Q38SD2 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
LRRK1Q38SD2 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC22.58■■□□□ 1.21
LRRK1Q38SD2 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
LRRK1Q38SD2 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC22.58■■□□□ 1.21
LRRK1Q38SD2 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
LRRK1Q38SD2 AC004812.2-201ENST00000611079 2094 ntBASIC22.58■■□□□ 1.2
LRRK1Q38SD2 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
LRRK1Q38SD2 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.2
LRRK1Q38SD2 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
LRRK1Q38SD2 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
LRRK1Q38SD2 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
LRRK1Q38SD2 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
LRRK1Q38SD2 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
LRRK1Q38SD2 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
LRRK1Q38SD2 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
LRRK1Q38SD2 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
LRRK1Q38SD2 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC22.57■■□□□ 1.2
LRRK1Q38SD2 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
LRRK1Q38SD2 AC006455.2-201ENST00000429931 906 ntBASIC22.57■■□□□ 1.2
LRRK1Q38SD2 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC22.57■■□□□ 1.2
LRRK1Q38SD2 AC106739.1-201ENST00000617035 715 ntBASIC22.57■■□□□ 1.2
LRRK1Q38SD2 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC22.57■■□□□ 1.2
LRRK1Q38SD2 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
LRRK1Q38SD2 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC22.56■■□□□ 1.2
LRRK1Q38SD2 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
LRRK1Q38SD2 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
LRRK1Q38SD2 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
LRRK1Q38SD2 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC22.55■■□□□ 1.2
LRRK1Q38SD2 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
LRRK1Q38SD2 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
LRRK1Q38SD2 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC22.55■■□□□ 1.2
LRRK1Q38SD2 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
LRRK1Q38SD2 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC22.55■■□□□ 1.2
LRRK1Q38SD2 AL139246.5-201ENST00000606645 996 ntBASIC22.55■■□□□ 1.2
LRRK1Q38SD2 RALB-208ENST00000631312 311 ntTSL 5 BASIC22.55■■□□□ 1.2
LRRK1Q38SD2 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
LRRK1Q38SD2 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC22.54■■□□□ 1.2
LRRK1Q38SD2 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
LRRK1Q38SD2 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC22.54■■□□□ 1.2
LRRK1Q38SD2 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC22.54■■□□□ 1.2
LRRK1Q38SD2 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LRRK1Q38SD2 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC22.54■■□□□ 1.2
LRRK1Q38SD2 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC22.54■■□□□ 1.2
LRRK1Q38SD2 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC22.54■■□□□ 1.2
LRRK1Q38SD2 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LRRK1Q38SD2 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
LRRK1Q38SD2 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC22.53■■□□□ 1.2
LRRK1Q38SD2 AC024257.2-201ENST00000549699 147 ntBASIC22.53■■□□□ 1.2
LRRK1Q38SD2 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
LRRK1Q38SD2 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC22.53■■□□□ 1.2
LRRK1Q38SD2 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC22.53■■□□□ 1.2
LRRK1Q38SD2 AL031432.3-201ENST00000607698 485 ntBASIC22.53■■□□□ 1.2
LRRK1Q38SD2 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC22.53■■□□□ 1.2
LRRK1Q38SD2 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
LRRK1Q38SD2 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22.53■■□□□ 1.2
LRRK1Q38SD2 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC22.53■■□□□ 1.2
LRRK1Q38SD2 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
LRRK1Q38SD2 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC22.52■■□□□ 1.2
LRRK1Q38SD2 AC099791.2-201ENST00000605725 427 ntBASIC22.52■■□□□ 1.2
LRRK1Q38SD2 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
LRRK1Q38SD2 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC22.52■■□□□ 1.2
LRRK1Q38SD2 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
LRRK1Q38SD2 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
LRRK1Q38SD2 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LRRK1Q38SD2 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
LRRK1Q38SD2 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LRRK1Q38SD2 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
LRRK1Q38SD2 UNC93B3-201ENST00000308076 687 ntBASIC22.51■■□□□ 1.19
LRRK1Q38SD2 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
LRRK1Q38SD2 DUX4L19-201ENST00000557448 1267 ntBASIC22.51■■□□□ 1.19
LRRK1Q38SD2 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
LRRK1Q38SD2 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LRRK1Q38SD2 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LRRK1Q38SD2 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LRRK1Q38SD2 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
LRRK1Q38SD2 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
LRRK1Q38SD2 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC22.5■■□□□ 1.19
LRRK1Q38SD2 ASB1-202ENST00000409297 878 ntTSL 5 BASIC22.5■■□□□ 1.19
LRRK1Q38SD2 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC22.5■■□□□ 1.19
LRRK1Q38SD2 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
LRRK1Q38SD2 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms