Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC14.36□□□□□ -0.11
HSPG2P98160 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HSPG2P98160 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC14.36□□□□□ -0.11
HSPG2P98160 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HSPG2P98160 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
HSPG2P98160 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HSPG2P98160 KLF13-207ENST00000560473 489 ntTSL 3 BASIC14.35□□□□□ -0.11
HSPG2P98160 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC14.35□□□□□ -0.11
HSPG2P98160 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC14.35□□□□□ -0.11
HSPG2P98160 GPX1P1-201ENST00000388829 606 ntBASIC14.35□□□□□ -0.11
HSPG2P98160 IGHV3-19-201ENST00000521488 291 ntBASIC14.35□□□□□ -0.11
HSPG2P98160 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
HSPG2P98160 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
HSPG2P98160 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
HSPG2P98160 AC126544.1-201ENST00000580842 1059 ntBASIC14.35□□□□□ -0.11
HSPG2P98160 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HSPG2P98160 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HSPG2P98160 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
HSPG2P98160 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
HSPG2P98160 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
HSPG2P98160 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HSPG2P98160 WWOX-218ENST00000627394 894 ntTSL 5 BASIC14.34□□□□□ -0.11
HSPG2P98160 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC14.34□□□□□ -0.11
HSPG2P98160 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HSPG2P98160 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HSPG2P98160 VGF-203ENST00000611537 1622 ntTSL 5 BASIC14.34□□□□□ -0.11
HSPG2P98160 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC14.34□□□□□ -0.11
HSPG2P98160 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HSPG2P98160 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
HSPG2P98160 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HSPG2P98160 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC14.34□□□□□ -0.11
HSPG2P98160 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC14.34□□□□□ -0.11
HSPG2P98160 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC14.34□□□□□ -0.11
HSPG2P98160 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC14.34□□□□□ -0.11
HSPG2P98160 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
HSPG2P98160 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC14.34□□□□□ -0.11
HSPG2P98160 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC14.33□□□□□ -0.12
HSPG2P98160 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC14.33□□□□□ -0.12
HSPG2P98160 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HSPG2P98160 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HSPG2P98160 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC14.33□□□□□ -0.12
HSPG2P98160 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HSPG2P98160 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC14.33□□□□□ -0.12
HSPG2P98160 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HSPG2P98160 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC14.33□□□□□ -0.12
HSPG2P98160 AC096887.2-201ENST00000623443 1957 ntBASIC14.33□□□□□ -0.12
HSPG2P98160 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HSPG2P98160 APTR-205ENST00000447009 902 ntTSL 2 BASIC14.33□□□□□ -0.12
HSPG2P98160 AICDA-202ENST00000537228 667 ntTSL 5 BASIC14.33□□□□□ -0.12
HSPG2P98160 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HSPG2P98160 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC14.33□□□□□ -0.12
HSPG2P98160 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HSPG2P98160 AP004609.3-201ENST00000610705 1884 ntBASIC14.32□□□□□ -0.12
HSPG2P98160 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HSPG2P98160 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HSPG2P98160 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HSPG2P98160 AC016769.1-201ENST00000409132 1010 ntBASIC14.32□□□□□ -0.12
HSPG2P98160 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
HSPG2P98160 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HSPG2P98160 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HSPG2P98160 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HSPG2P98160 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
HSPG2P98160 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
HSPG2P98160 BID-214ENST00000617586 542 ntTSL 5 BASIC14.32□□□□□ -0.12
HSPG2P98160 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HSPG2P98160 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC14.32□□□□□ -0.12
HSPG2P98160 AL354811.1-201ENST00000610286 706 ntBASIC14.32□□□□□ -0.12
HSPG2P98160 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HSPG2P98160 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
HSPG2P98160 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HSPG2P98160 DBI-210ENST00000542275 757 ntTSL 5 BASIC14.31□□□□□ -0.12
HSPG2P98160 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HSPG2P98160 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC14.31□□□□□ -0.12
HSPG2P98160 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HSPG2P98160 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HSPG2P98160 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HSPG2P98160 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HSPG2P98160 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HSPG2P98160 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HSPG2P98160 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC14.31□□□□□ -0.12
HSPG2P98160 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HSPG2P98160 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
HSPG2P98160 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HSPG2P98160 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HSPG2P98160 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HSPG2P98160 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
HSPG2P98160 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HSPG2P98160 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
HSPG2P98160 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC14.3□□□□□ -0.12
HSPG2P98160 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC14.3□□□□□ -0.12
HSPG2P98160 AL050303.2-201ENST00000619798 666 ntBASIC14.3□□□□□ -0.12
HSPG2P98160 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HSPG2P98160 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HSPG2P98160 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HSPG2P98160 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HSPG2P98160 AC137761.2-201ENST00000561729 223 ntBASIC14.29□□□□□ -0.12
HSPG2P98160 AC145350.3-201ENST00000569033 163 ntBASIC14.29□□□□□ -0.12
HSPG2P98160 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC14.29□□□□□ -0.12
HSPG2P98160 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC14.29□□□□□ -0.12
HSPG2P98160 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms