Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDX1P47902 EP400NL-214ENST00000641289 2402 ntBASIC18.31■□□□□ 0.52
CDX1P47902 FOXO3B-201ENST00000395675 1928 ntBASIC18.31■□□□□ 0.52
CDX1P47902 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CDX1P47902 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDX1P47902 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDX1P47902 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC18.3■□□□□ 0.52
CDX1P47902 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC18.3■□□□□ 0.52
CDX1P47902 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CDX1P47902 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDX1P47902 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDX1P47902 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDX1P47902 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDX1P47902 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CDX1P47902 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC18.3■□□□□ 0.52
CDX1P47902 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CDX1P47902 AC011551.1-201ENST00000614101 683 ntBASIC18.3■□□□□ 0.52
CDX1P47902 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDX1P47902 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDX1P47902 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC18.3■□□□□ 0.52
CDX1P47902 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CDX1P47902 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDX1P47902 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDX1P47902 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDX1P47902 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDX1P47902 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDX1P47902 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDX1P47902 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDX1P47902 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CDX1P47902 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDX1P47902 MYB-221ENST00000527615 2381 ntTSL 5 BASIC18.29■□□□□ 0.52
CDX1P47902 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDX1P47902 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC18.29■□□□□ 0.52
CDX1P47902 BX664725.1-201ENST00000438252 379 ntBASIC18.29■□□□□ 0.52
CDX1P47902 OR2A1-AS1-204ENST00000470435 602 ntBASIC18.29■□□□□ 0.52
CDX1P47902 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC18.29■□□□□ 0.52
CDX1P47902 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDX1P47902 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CDX1P47902 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDX1P47902 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDX1P47902 RNF165-205ENST00000588679 2904 ntBASIC18.29■□□□□ 0.52
CDX1P47902 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDX1P47902 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDX1P47902 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18.28■□□□□ 0.52
CDX1P47902 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDX1P47902 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDX1P47902 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
CDX1P47902 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC18.28■□□□□ 0.52
CDX1P47902 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC18.28■□□□□ 0.52
CDX1P47902 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDX1P47902 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDX1P47902 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC18.27■□□□□ 0.52
CDX1P47902 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDX1P47902 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CDX1P47902 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CDX1P47902 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC18.27■□□□□ 0.52
CDX1P47902 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CDX1P47902 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC18.27■□□□□ 0.52
CDX1P47902 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.52
CDX1P47902 AC239859.2-201ENST00000444165 318 ntBASIC18.27■□□□□ 0.52
CDX1P47902 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC18.27■□□□□ 0.52
CDX1P47902 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDX1P47902 AC137630.3-201ENST00000607245 391 ntBASIC18.27■□□□□ 0.52
CDX1P47902 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CDX1P47902 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CDX1P47902 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.27■□□□□ 0.51
CDX1P47902 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CDX1P47902 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC18.26■□□□□ 0.51
CDX1P47902 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CDX1P47902 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC18.26■□□□□ 0.51
CDX1P47902 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDX1P47902 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC18.26■□□□□ 0.51
CDX1P47902 KRT125P-201ENST00000546827 989 ntBASIC18.26■□□□□ 0.51
CDX1P47902 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC18.26■□□□□ 0.51
CDX1P47902 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC18.26■□□□□ 0.51
CDX1P47902 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX1P47902 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX1P47902 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX1P47902 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX1P47902 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX1P47902 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX1P47902 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX1P47902 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CDX1P47902 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX1P47902 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC18.25■□□□□ 0.51
CDX1P47902 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
CDX1P47902 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX1P47902 GUSBP5-201ENST00000418136 578 ntBASIC18.25■□□□□ 0.51
CDX1P47902 AC137767.1-201ENST00000602918 1920 ntBASIC18.25■□□□□ 0.51
CDX1P47902 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC18.25■□□□□ 0.51
CDX1P47902 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC18.25■□□□□ 0.51
CDX1P47902 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC18.25■□□□□ 0.51
CDX1P47902 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CDX1P47902 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDX1P47902 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDX1P47902 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDX1P47902 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDX1P47902 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDX1P47902 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CDX1P47902 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms