Protein–RNA interactions for Protein: P23246

SFPQ, Splicing factor, proline- and glutamine-rich, humanhuman

Known RBP eCLIP

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SFPQP23246 SEPT9-203ENST00000427177 3821 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.027e-7■■□□□ 14.1
SFPQP23246 HPCAL1-205ENST00000423674 586 ntTSL 425.54■■□□□ 1.682e-6■■□□□ 14.1
SFPQP23246 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.32e-6■■□□□ 14.1
SFPQP23246 RREB1-207ENST00000475946 9067 ntTSL 1 (best)9.86□□□□□ -0.831e-6■■□□□ 14.1
SFPQP23246 TBC1D16-204ENST00000571872 567 ntTSL 519.41■□□□□ 0.79e-7■■□□□ 14.1
SFPQP23246 TBC1D16-201ENST00000310924 10936 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.289e-7■■□□□ 14.1
SFPQP23246 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC23.55■■□□□ 1.364e-6■■□□□ 14.1
SFPQP23246 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.994e-6■■□□□ 14.1
SFPQP23246 UNKL-206ENST00000402641 669 ntTSL 320.77■□□□□ 0.924e-6■■□□□ 14.1
SFPQP23246 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC18■□□□□ 0.474e-6■■□□□ 14.1
SFPQP23246 UNKL-214ENST00000515195 481 ntTSL 416.8■□□□□ 0.284e-6■■□□□ 14.1
SFPQP23246 UNKL-213ENST00000513783 582 ntTSL 415.86■□□□□ 0.134e-6■■□□□ 14.1
SFPQP23246 UNKL-207ENST00000403703 4281 ntTSL 1 (best)15.74■□□□□ 0.114e-6■■□□□ 14.1
SFPQP23246 UNKL-210ENST00000508903 3430 ntAPPRIS P5 TSL 5 BASIC14.13□□□□□ -0.154e-6■■□□□ 14.1
SFPQP23246 LRMDA-210ENST00000593817 221 ntTSL 35.65□□□□□ -1.51e-6■■□□□ 14.1
SFPQP23246 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.041e-6■■□□□ 14.1
SFPQP23246 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.02■□□□□ 0.81e-6■■□□□ 14.1
SFPQP23246 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC19.06■□□□□ 0.641e-6■■□□□ 14.1
SFPQP23246 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC19.06■□□□□ 0.641e-6■■□□□ 14.1
SFPQP23246 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.456e-7■■□□□ 14
SFPQP23246 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.26e-7■■□□□ 14
SFPQP23246 BMP4-208ENST00000559642 505 ntTSL 314.37□□□□□ -0.116e-7■■□□□ 14
SFPQP23246 VDAC1-204ENST00000425992 703 ntTSL 326.49■■□□□ 1.834e-6■■□□□ 14
SFPQP23246 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.384e-6■■□□□ 14
SFPQP23246 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.134e-6■■□□□ 14
SFPQP23246 VDAC1-202ENST00000395044 1807 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.254e-6■■□□□ 14
SFPQP23246 VDAC1-205ENST00000466080 831 ntTSL 37.6□□□□□ -1.194e-6■■□□□ 14
SFPQP23246 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.221e-6■■□□□ 14
SFPQP23246 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.391e-6■■□□□ 14
SFPQP23246 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.281e-6■■□□□ 14
SFPQP23246 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC22.83■■□□□ 1.251e-6■■□□□ 14
SFPQP23246 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.32■□□□□ 0.681e-6■■□□□ 14
SFPQP23246 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.48e-9■■□□□ 14
SFPQP23246 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC35.37■■■■□ 3.259e-7■■□□□ 14
SFPQP23246 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.919e-7■■□□□ 14
SFPQP23246 MBD3-211ENST00000592965 568 ntTSL 426.07■■□□□ 1.769e-7■■□□□ 14
SFPQP23246 ZFYVE21-203ENST00000553512 636 ntTSL 524.32■■□□□ 1.489e-7■■□□□ 14
SFPQP23246 RERE-210ENST00000468247 414 ntTSL 223.43■■□□□ 1.349e-7■■□□□ 14
SFPQP23246 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC21.91■■□□□ 1.19e-7■■□□□ 14
SFPQP23246 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.079e-7■■□□□ 14
SFPQP23246 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.859e-7■■□□□ 14
SFPQP23246 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.799e-7■■□□□ 14
SFPQP23246 MBD3-204ENST00000585967 583 ntTSL 419.16■□□□□ 0.669e-7■■□□□ 14
SFPQP23246 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC18.64■□□□□ 0.579e-7■■□□□ 14
SFPQP23246 ZFYVE21-205ENST00000554255 570 ntTSL 218.6■□□□□ 0.579e-7■■□□□ 14
SFPQP23246 ZFYVE21-210ENST00000556610 364 ntTSL 517.12■□□□□ 0.339e-7■■□□□ 14
SFPQP23246 ZFYVE21-206ENST00000554630 566 ntTSL 216.95■□□□□ 0.39e-7■■□□□ 14
SFPQP23246 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.199e-7■■□□□ 14
SFPQP23246 SMOC1-204ENST00000555917 570 ntTSL 414.38□□□□□ -0.119e-7■■□□□ 14
SFPQP23246 ARHGAP12-203ENST00000375245 4958 ntTSL 1 (best) BASIC14.29□□□□□ -0.129e-7■■□□□ 14
SFPQP23246 SMOC1-202ENST00000381280 3666 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.189e-7■■□□□ 14
SFPQP23246 ARHGAP12-205ENST00000396144 5084 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.29e-7■■□□□ 14
SFPQP23246 SPECC1L-204ENST00000437398 6674 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.399e-7■■□□□ 14
SFPQP23246 ARHGAP12-202ENST00000344936 4128 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.399e-7■■□□□ 14
SFPQP23246 SPECC1L-201ENST00000314328 6756 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.439e-7■■□□□ 14
SFPQP23246 ITPR2-203ENST00000451599 2577 ntTSL 1 (best)11.6□□□□□ -0.559e-7■■□□□ 14
SFPQP23246 LRIG2-201ENST00000361127 11555 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.839e-7■■□□□ 14
SFPQP23246 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.869e-10■■□□□ 14
SFPQP23246 ARHGAP12-204ENST00000375250 4914 ntTSL 1 (best) BASIC8.55□□□□□ -1.049e-7■■□□□ 14
SFPQP23246 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC8.17□□□□□ -1.19e-7■■□□□ 14
SFPQP23246 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC6.93□□□□□ -1.39e-10■■□□□ 14
SFPQP23246 FLNB-204ENST00000429972 9430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.312e-6■■□□□ 13.9
SFPQP23246 FLNB-201ENST00000295956 9463 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.322e-6■■□□□ 13.9
SFPQP23246 FLNB-202ENST00000358537 9391 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.472e-6■■□□□ 13.9
SFPQP23246 FLNB-212ENST00000490882 8079 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.612e-6■■□□□ 13.9
SFPQP23246 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.91■□□□□ 0.624e-7■■□□□ 13.9
SFPQP23246 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.494e-7■■□□□ 13.9
SFPQP23246 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.298e-7■■□□□ 13.9
SFPQP23246 SEPT9-227ENST00000590059 670 ntTSL 523.08■■□□□ 1.297e-7■■□□□ 13.9
SFPQP23246 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.747e-7■■□□□ 13.9
SFPQP23246 PLCB1-224ENST00000636319 2930 ntTSL 521.78■■□□□ 1.082e-6■■□□□ 13.9
SFPQP23246 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC20.82■□□□□ 0.922e-6■■□□□ 13.9
SFPQP23246 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.612e-6■■□□□ 13.9
SFPQP23246 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC18.35■□□□□ 0.532e-6■■□□□ 13.9
SFPQP23246 PLCB1-214ENST00000626161 706 ntTSL 518.03■□□□□ 0.482e-6■■□□□ 13.9
SFPQP23246 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC16.3■□□□□ 0.22e-6■■□□□ 13.9
SFPQP23246 PLCB1-219ENST00000630495 759 ntTSL 59.1□□□□□ -0.952e-6■■□□□ 13.9
SFPQP23246 PLCB1-212ENST00000625874 3206 ntTSL 28.4□□□□□ -1.072e-6■■□□□ 13.9
SFPQP23246 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC7.25□□□□□ -1.252e-6■■□□□ 13.9
SFPQP23246 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC5.1□□□□□ -1.592e-6■■□□□ 13.9
SFPQP23246 ACSL3-209ENST00000535678 560 ntTSL 322.26■■□□□ 1.153e-7■■□□□ 13.9
SFPQP23246 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.523e-7■■□□□ 13.9
SFPQP23246 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.43e-7■■□□□ 13.9
SFPQP23246 HS6ST1-203ENST00000469019 559 ntTSL 416.67■□□□□ 0.269e-7■■□□□ 13.8
SFPQP23246 HS6ST1-201ENST00000259241 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.039e-7■■□□□ 13.8
SFPQP23246 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC22.63■■□□□ 1.211e-7■■□□□ 13.8
SFPQP23246 GREB1-210ENST00000628795 438 ntTSL 55.55□□□□□ -1.521e-6■■□□□ 13.8
SFPQP23246 ARID1B-201ENST00000319584 2199 ntTSL 214.64□□□□□ -0.074e-7■■□□□ 13.8
SFPQP23246 ARID1B-206ENST00000452544 4443 ntTSL 28.14□□□□□ -1.114e-7■■□□□ 13.8
SFPQP23246 ARID1B-231ENST00000637887 1468 ntTSL 55.83□□□□□ -1.484e-7■■□□□ 13.8
SFPQP23246 SEPT9-215ENST00000586521 601 ntTSL 419.27■□□□□ 0.688e-7■■□□□ 13.7
SFPQP23246 SHANK2-213ENST00000460048 736 ntTSL 518.4■□□□□ 0.541e-6■■□□□ 13.7
SFPQP23246 NCOA2-205ENST00000520416 526 ntTSL 322.46■■□□□ 1.192e-6■■□□□ 13.7
SFPQP23246 CRK-204ENST00000574295 1391 ntTSL 5 BASIC22.45■■□□□ 1.184e-6■■□□□ 13.7
SFPQP23246 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.494e-6■■□□□ 13.7
SFPQP23246 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.06■□□□□ 0.484e-6■■□□□ 13.7
SFPQP23246 CRK-203ENST00000572145 830 ntTSL 310.97□□□□□ -0.654e-6■■□□□ 13.7
SFPQP23246 AL109614.1-201ENST00000620327 419 ntBASIC9.94□□□□□ -0.822e-12■■□□□ 13.7
SFPQP23246 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.172e-6■■□□□ 13.7
SFPQP23246 NCOA2-202ENST00000518287 6087 ntTSL 57.66□□□□□ -1.182e-6■■□□□ 13.7
Retrieved 100 of 4,991 protein–RNA pairs in 170.6 ms