Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC22.06■■□□□ 1.12
COL5A1P20908 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC22.05■■□□□ 1.12
COL5A1P20908 VGF-203ENST00000611537 1622 ntTSL 5 BASIC22.05■■□□□ 1.12
COL5A1P20908 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
COL5A1P20908 YBX1P1-201ENST00000445822 960 ntBASIC22.05■■□□□ 1.12
COL5A1P20908 AL031602.1-201ENST00000633169 911 ntBASIC22.05■■□□□ 1.12
COL5A1P20908 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
COL5A1P20908 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
COL5A1P20908 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC22.04■■□□□ 1.12
COL5A1P20908 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COL5A1P20908 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL5A1P20908 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL5A1P20908 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL5A1P20908 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL5A1P20908 GRAMD4P2-201ENST00000423297 1097 ntBASIC22.04■■□□□ 1.12
COL5A1P20908 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL5A1P20908 AICDA-202ENST00000537228 667 ntTSL 5 BASIC22.04■■□□□ 1.12
COL5A1P20908 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC22.04■■□□□ 1.12
COL5A1P20908 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL5A1P20908 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
COL5A1P20908 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC22.04■■□□□ 1.12
COL5A1P20908 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL5A1P20908 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
COL5A1P20908 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
COL5A1P20908 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC22.03■■□□□ 1.12
COL5A1P20908 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
COL5A1P20908 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
COL5A1P20908 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
COL5A1P20908 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC22.03■■□□□ 1.12
COL5A1P20908 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL5A1P20908 SLC6A10P-202ENST00000431994 2058 ntBASIC22.03■■□□□ 1.12
COL5A1P20908 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
COL5A1P20908 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC22.02■■□□□ 1.12
COL5A1P20908 DUX4L2-201ENST00000561772 1275 ntBASIC22.02■■□□□ 1.12
COL5A1P20908 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC22.02■■□□□ 1.12
COL5A1P20908 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC22.02■■□□□ 1.12
COL5A1P20908 DUX4L6-201ENST00000626483 1275 ntBASIC22.02■■□□□ 1.12
COL5A1P20908 DUX4L1-201ENST00000627662 1275 ntBASIC22.02■■□□□ 1.12
COL5A1P20908 DUX4L8-201ENST00000629013 1275 ntBASIC22.02■■□□□ 1.12
COL5A1P20908 DUX4L3-201ENST00000630187 1275 ntBASIC22.02■■□□□ 1.12
COL5A1P20908 DUX4L7-201ENST00000630678 1275 ntBASIC22.02■■□□□ 1.12
COL5A1P20908 DUX4L5-201ENST00000630834 1275 ntBASIC22.02■■□□□ 1.12
COL5A1P20908 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
COL5A1P20908 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC22.02■■□□□ 1.12
COL5A1P20908 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
COL5A1P20908 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
COL5A1P20908 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL5A1P20908 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC22.01■■□□□ 1.11
COL5A1P20908 AC012414.1-201ENST00000556676 535 ntBASIC22.01■■□□□ 1.11
COL5A1P20908 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC22.01■■□□□ 1.11
COL5A1P20908 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC22.01■■□□□ 1.11
COL5A1P20908 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
COL5A1P20908 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL5A1P20908 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC22.01■■□□□ 1.11
COL5A1P20908 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
COL5A1P20908 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC22.01■■□□□ 1.11
COL5A1P20908 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC22.01■■□□□ 1.11
COL5A1P20908 AC126544.1-201ENST00000580842 1059 ntBASIC22.01■■□□□ 1.11
COL5A1P20908 RAB43-208ENST00000615093 783 ntTSL 5 BASIC22.01■■□□□ 1.11
COL5A1P20908 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC22.01■■□□□ 1.11
COL5A1P20908 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC22■■□□□ 1.11
COL5A1P20908 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC22■■□□□ 1.11
COL5A1P20908 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COL5A1P20908 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC22■■□□□ 1.11
COL5A1P20908 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
COL5A1P20908 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.99■■□□□ 1.11
COL5A1P20908 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.99■■□□□ 1.11
COL5A1P20908 AC092437.1-201ENST00000624794 1048 ntBASIC21.99■■□□□ 1.11
COL5A1P20908 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.99■■□□□ 1.11
COL5A1P20908 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.99■■□□□ 1.11
COL5A1P20908 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
COL5A1P20908 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL5A1P20908 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL5A1P20908 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
COL5A1P20908 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL5A1P20908 AC022517.1-201ENST00000592429 346 ntBASIC21.99■■□□□ 1.11
COL5A1P20908 AL137784.2-201ENST00000607332 1000 ntBASIC21.99■■□□□ 1.11
COL5A1P20908 AL358852.1-201ENST00000623174 1268 ntBASIC21.99■■□□□ 1.11
COL5A1P20908 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL5A1P20908 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL5A1P20908 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.98■■□□□ 1.11
COL5A1P20908 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.98■■□□□ 1.11
COL5A1P20908 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL5A1P20908 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.98■■□□□ 1.11
COL5A1P20908 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL5A1P20908 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.98■■□□□ 1.11
COL5A1P20908 AC123595.1-201ENST00000440769 1046 ntBASIC21.98■■□□□ 1.11
COL5A1P20908 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL5A1P20908 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.98■■□□□ 1.11
COL5A1P20908 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.98■■□□□ 1.11
COL5A1P20908 TSPY26P-201ENST00000476365 1326 ntBASIC21.98■■□□□ 1.11
COL5A1P20908 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.98■■□□□ 1.11
COL5A1P20908 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL5A1P20908 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL5A1P20908 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.97■■□□□ 1.11
COL5A1P20908 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.97■■□□□ 1.11
COL5A1P20908 IGHV3-19-201ENST00000521488 291 ntBASIC21.97■■□□□ 1.11
COL5A1P20908 AL161729.1-201ENST00000604104 1402 ntBASIC21.97■■□□□ 1.11
COL5A1P20908 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
COL5A1P20908 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms