Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ATF4P18848 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC18.77■□□□□ 0.6
ATF4P18848 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATF4P18848 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATF4P18848 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATF4P18848 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
ATF4P18848 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATF4P18848 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ATF4P18848 EED-207ENST00000528180 1745 ntTSL 5 BASIC18.77■□□□□ 0.59
ATF4P18848 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATF4P18848 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATF4P18848 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ATF4P18848 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATF4P18848 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATF4P18848 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATF4P18848 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ATF4P18848 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC18.76■□□□□ 0.59
ATF4P18848 AC007952.6-201ENST00000573168 2673 ntBASIC18.76■□□□□ 0.59
ATF4P18848 AC003957.1-201ENST00000625108 2673 ntBASIC18.76■□□□□ 0.59
ATF4P18848 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATF4P18848 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATF4P18848 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
ATF4P18848 DUX4L13-201ENST00000554103 1267 ntBASIC18.76■□□□□ 0.59
ATF4P18848 DUX4L15-201ENST00000611059 1267 ntBASIC18.76■□□□□ 0.59
ATF4P18848 DUX4L23-201ENST00000615195 1269 ntBASIC18.76■□□□□ 0.59
ATF4P18848 DUX4L24-201ENST00000617576 1269 ntBASIC18.76■□□□□ 0.59
ATF4P18848 DUX4L22-201ENST00000618238 1269 ntBASIC18.76■□□□□ 0.59
ATF4P18848 DUX4L20-201ENST00000619712 1269 ntBASIC18.76■□□□□ 0.59
ATF4P18848 DUX4L21-201ENST00000622058 1269 ntBASIC18.76■□□□□ 0.59
ATF4P18848 DUX4L10-201ENST00000622460 1267 ntBASIC18.76■□□□□ 0.59
ATF4P18848 DUX4L25-201ENST00000624915 1269 ntBASIC18.76■□□□□ 0.59
ATF4P18848 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATF4P18848 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATF4P18848 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ATF4P18848 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
ATF4P18848 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.76■□□□□ 0.59
ATF4P18848 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ATF4P18848 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC18.75■□□□□ 0.59
ATF4P18848 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.75■□□□□ 0.59
ATF4P18848 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATF4P18848 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ATF4P18848 CHML-204ENST00000638121 920 ntTSL 2 BASIC18.75■□□□□ 0.59
ATF4P18848 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATF4P18848 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATF4P18848 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATF4P18848 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.75■□□□□ 0.59
ATF4P18848 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
ATF4P18848 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATF4P18848 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATF4P18848 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC18.74■□□□□ 0.59
ATF4P18848 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATF4P18848 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATF4P18848 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATF4P18848 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATF4P18848 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC18.74■□□□□ 0.59
ATF4P18848 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC18.74■□□□□ 0.59
ATF4P18848 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATF4P18848 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATF4P18848 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATF4P18848 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATF4P18848 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATF4P18848 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATF4P18848 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATF4P18848 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.74■□□□□ 0.59
ATF4P18848 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATF4P18848 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ATF4P18848 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATF4P18848 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ATF4P18848 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATF4P18848 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ATF4P18848 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
ATF4P18848 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATF4P18848 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC18.73■□□□□ 0.59
ATF4P18848 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATF4P18848 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.73■□□□□ 0.59
ATF4P18848 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATF4P18848 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ATF4P18848 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
ATF4P18848 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.72■□□□□ 0.59
ATF4P18848 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATF4P18848 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATF4P18848 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATF4P18848 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.72■□□□□ 0.59
ATF4P18848 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC18.72■□□□□ 0.59
ATF4P18848 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATF4P18848 AC138932.1-201ENST00000534164 6830 ntBASIC18.71■□□□□ 0.59
ATF4P18848 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC18.71■□□□□ 0.59
ATF4P18848 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
ATF4P18848 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
ATF4P18848 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ATF4P18848 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATF4P18848 CHST11-202ENST00000546689 756 ntTSL 2 BASIC18.71■□□□□ 0.59
ATF4P18848 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
ATF4P18848 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC18.71■□□□□ 0.59
ATF4P18848 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.71■□□□□ 0.59
ATF4P18848 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATF4P18848 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC18.71■□□□□ 0.59
ATF4P18848 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATF4P18848 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATF4P18848 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms