Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC26.82■■□□□ 1.88
HMGB1P09429 AL451085.2-201ENST00000605085 799 ntBASIC26.82■■□□□ 1.88
HMGB1P09429 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC26.82■■□□□ 1.88
HMGB1P09429 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC26.82■■□□□ 1.88
HMGB1P09429 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC26.81■■□□□ 1.88
HMGB1P09429 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
HMGB1P09429 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC26.81■■□□□ 1.88
HMGB1P09429 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC26.81■■□□□ 1.88
HMGB1P09429 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC26.81■■□□□ 1.88
HMGB1P09429 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC26.81■■□□□ 1.88
HMGB1P09429 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
HMGB1P09429 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
HMGB1P09429 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
HMGB1P09429 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC26.81■■□□□ 1.88
HMGB1P09429 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
HMGB1P09429 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
HMGB1P09429 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC26.81■■□□□ 1.88
HMGB1P09429 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
HMGB1P09429 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC26.81■■□□□ 1.88
HMGB1P09429 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC26.81■■□□□ 1.88
HMGB1P09429 CASK-201ENST00000378154 2494 ntTSL 5 BASIC26.8■■□□□ 1.88
HMGB1P09429 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC26.8■■□□□ 1.88
HMGB1P09429 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
HMGB1P09429 MIR4787-201ENST00000607364 84 ntBASIC26.8■■□□□ 1.88
HMGB1P09429 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC26.79■■□□□ 1.88
HMGB1P09429 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC26.79■■□□□ 1.88
HMGB1P09429 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC26.79■■□□□ 1.88
HMGB1P09429 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC26.79■■□□□ 1.88
HMGB1P09429 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC26.79■■□□□ 1.88
HMGB1P09429 AC239859.2-201ENST00000444165 318 ntBASIC26.79■■□□□ 1.88
HMGB1P09429 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC26.79■■□□□ 1.88
HMGB1P09429 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC26.79■■□□□ 1.88
HMGB1P09429 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
HMGB1P09429 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
HMGB1P09429 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
HMGB1P09429 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
HMGB1P09429 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC26.78■■□□□ 1.88
HMGB1P09429 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC26.78■■□□□ 1.88
HMGB1P09429 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
HMGB1P09429 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC26.78■■□□□ 1.88
HMGB1P09429 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC26.77■■□□□ 1.88
HMGB1P09429 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
HMGB1P09429 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
HMGB1P09429 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
HMGB1P09429 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
HMGB1P09429 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
HMGB1P09429 NFE2L3P1-201ENST00000588207 1959 ntBASIC26.77■■□□□ 1.88
HMGB1P09429 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
HMGB1P09429 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
HMGB1P09429 USF2-207ENST00000595068 1612 ntTSL 5 BASIC26.77■■□□□ 1.88
HMGB1P09429 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
HMGB1P09429 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
HMGB1P09429 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC26.77■■□□□ 1.88
HMGB1P09429 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
HMGB1P09429 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC26.77■■□□□ 1.88
HMGB1P09429 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC26.77■■□□□ 1.88
HMGB1P09429 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC26.77■■□□□ 1.88
HMGB1P09429 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
HMGB1P09429 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.88
HMGB1P09429 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC26.76■■□□□ 1.88
HMGB1P09429 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC26.76■■□□□ 1.88
HMGB1P09429 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
HMGB1P09429 AC005703.6-201ENST00000623265 1329 ntBASIC26.76■■□□□ 1.87
HMGB1P09429 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC26.76■■□□□ 1.87
HMGB1P09429 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC26.76■■□□□ 1.87
HMGB1P09429 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
HMGB1P09429 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
HMGB1P09429 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC26.76■■□□□ 1.87
HMGB1P09429 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
HMGB1P09429 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
HMGB1P09429 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC26.75■■□□□ 1.87
HMGB1P09429 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC26.75■■□□□ 1.87
HMGB1P09429 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC26.75■■□□□ 1.87
HMGB1P09429 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
HMGB1P09429 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
HMGB1P09429 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
HMGB1P09429 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC26.74■■□□□ 1.87
HMGB1P09429 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
HMGB1P09429 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC26.74■■□□□ 1.87
HMGB1P09429 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
HMGB1P09429 H19-210ENST00000439725 1929 ntTSL 2 BASIC26.74■■□□□ 1.87
HMGB1P09429 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC26.74■■□□□ 1.87
HMGB1P09429 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC26.74■■□□□ 1.87
HMGB1P09429 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
HMGB1P09429 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
HMGB1P09429 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC26.73■■□□□ 1.87
HMGB1P09429 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC26.73■■□□□ 1.87
HMGB1P09429 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
HMGB1P09429 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC26.73■■□□□ 1.87
HMGB1P09429 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
HMGB1P09429 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
HMGB1P09429 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC26.73■■□□□ 1.87
HMGB1P09429 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC26.73■■□□□ 1.87
HMGB1P09429 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC26.72■■□□□ 1.87
HMGB1P09429 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC26.72■■□□□ 1.87
HMGB1P09429 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC26.72■■□□□ 1.87
HMGB1P09429 CLTA-206ENST00000466396 695 ntTSL 2 BASIC26.72■■□□□ 1.87
HMGB1P09429 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC26.72■■□□□ 1.87
HMGB1P09429 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC26.72■■□□□ 1.87
HMGB1P09429 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC26.71■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms