Protein–RNA interactions for Protein: O95716

RAB3D, Ras-related protein Rab-3D, humanhuman

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB3DO95716 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
RAB3DO95716 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RAB3DO95716 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RAB3DO95716 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RAB3DO95716 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
RAB3DO95716 AC007375.3-201ENST00000600936 2314 ntBASIC19.24■□□□□ 0.67
RAB3DO95716 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RAB3DO95716 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RAB3DO95716 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC19.24■□□□□ 0.67
RAB3DO95716 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RAB3DO95716 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
RAB3DO95716 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC19.24■□□□□ 0.67
RAB3DO95716 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RAB3DO95716 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
RAB3DO95716 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
RAB3DO95716 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
RAB3DO95716 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RAB3DO95716 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RAB3DO95716 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RAB3DO95716 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
RAB3DO95716 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RAB3DO95716 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC19.23■□□□□ 0.67
RAB3DO95716 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAB3DO95716 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAB3DO95716 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAB3DO95716 KRT18P10-201ENST00000388836 1287 ntBASIC19.22■□□□□ 0.67
RAB3DO95716 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC19.22■□□□□ 0.67
RAB3DO95716 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RAB3DO95716 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC19.22■□□□□ 0.67
RAB3DO95716 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAB3DO95716 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.22■□□□□ 0.67
RAB3DO95716 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAB3DO95716 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
RAB3DO95716 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RAB3DO95716 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
RAB3DO95716 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RAB3DO95716 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RAB3DO95716 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RAB3DO95716 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RAB3DO95716 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RAB3DO95716 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.21■□□□□ 0.67
RAB3DO95716 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
RAB3DO95716 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
RAB3DO95716 CR559946.2-201ENST00000623684 991 ntBASIC19.21■□□□□ 0.67
RAB3DO95716 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RAB3DO95716 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC19.21■□□□□ 0.67
RAB3DO95716 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RAB3DO95716 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RAB3DO95716 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RAB3DO95716 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RAB3DO95716 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.2■□□□□ 0.66
RAB3DO95716 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RAB3DO95716 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RAB3DO95716 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC19.2■□□□□ 0.66
RAB3DO95716 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC19.2■□□□□ 0.66
RAB3DO95716 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RAB3DO95716 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RAB3DO95716 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RAB3DO95716 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC19.2■□□□□ 0.66
RAB3DO95716 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RAB3DO95716 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.2■□□□□ 0.66
RAB3DO95716 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
RAB3DO95716 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC19.19■□□□□ 0.66
RAB3DO95716 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RAB3DO95716 AL161729.1-201ENST00000604104 1402 ntBASIC19.19■□□□□ 0.66
RAB3DO95716 AC242852.2-201ENST00000615738 1807 ntBASIC19.19■□□□□ 0.66
RAB3DO95716 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RAB3DO95716 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RAB3DO95716 REST-210ENST00000638187 1334 ntTSL 5 BASIC19.19■□□□□ 0.66
RAB3DO95716 AL024507.2-201ENST00000606070 2574 ntBASIC19.19■□□□□ 0.66
RAB3DO95716 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RAB3DO95716 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC19.19■□□□□ 0.66
RAB3DO95716 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RAB3DO95716 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
RAB3DO95716 RP9P-202ENST00000450133 1212 ntBASIC19.18■□□□□ 0.66
RAB3DO95716 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RAB3DO95716 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
RAB3DO95716 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RAB3DO95716 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC19.18■□□□□ 0.66
RAB3DO95716 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
RAB3DO95716 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.17■□□□□ 0.66
RAB3DO95716 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
RAB3DO95716 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RAB3DO95716 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
RAB3DO95716 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RAB3DO95716 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.17■□□□□ 0.66
RAB3DO95716 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RAB3DO95716 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC19.17■□□□□ 0.66
RAB3DO95716 AC060814.1-201ENST00000554326 538 ntBASIC19.17■□□□□ 0.66
RAB3DO95716 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RAB3DO95716 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RAB3DO95716 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.17■□□□□ 0.66
RAB3DO95716 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RAB3DO95716 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
RAB3DO95716 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.17■□□□□ 0.66
RAB3DO95716 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RAB3DO95716 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RAB3DO95716 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
RAB3DO95716 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
RAB3DO95716 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms