Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
MSH5O43196 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC30.26■■■□□ 2.44
MSH5O43196 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.44
MSH5O43196 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC30.26■■■□□ 2.43
MSH5O43196 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
MSH5O43196 AP000240.1-201ENST00000609910 452 ntBASIC30.26■■■□□ 2.43
MSH5O43196 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC30.26■■■□□ 2.43
MSH5O43196 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
MSH5O43196 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC30.26■■■□□ 2.43
MSH5O43196 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC30.26■■■□□ 2.43
MSH5O43196 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC30.26■■■□□ 2.43
MSH5O43196 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC30.26■■■□□ 2.43
MSH5O43196 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
MSH5O43196 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
MSH5O43196 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
MSH5O43196 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC30.25■■■□□ 2.43
MSH5O43196 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC30.25■■■□□ 2.43
MSH5O43196 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC30.25■■■□□ 2.43
MSH5O43196 AL355001.2-201ENST00000620617 1191 ntBASIC30.25■■■□□ 2.43
MSH5O43196 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
MSH5O43196 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
MSH5O43196 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
MSH5O43196 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC30.24■■■□□ 2.43
MSH5O43196 AC024257.2-201ENST00000549699 147 ntBASIC30.24■■■□□ 2.43
MSH5O43196 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
MSH5O43196 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC30.24■■■□□ 2.43
MSH5O43196 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
MSH5O43196 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
MSH5O43196 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
MSH5O43196 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
MSH5O43196 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
MSH5O43196 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC30.23■■■□□ 2.43
MSH5O43196 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
MSH5O43196 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC30.23■■■□□ 2.43
MSH5O43196 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC30.23■■■□□ 2.43
MSH5O43196 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC30.23■■■□□ 2.43
MSH5O43196 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
MSH5O43196 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC30.22■■■□□ 2.43
MSH5O43196 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
MSH5O43196 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
MSH5O43196 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
MSH5O43196 EDA-201ENST00000338901 1233 ntBASIC30.22■■■□□ 2.43
MSH5O43196 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC30.22■■■□□ 2.43
MSH5O43196 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC30.22■■■□□ 2.43
MSH5O43196 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
MSH5O43196 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
MSH5O43196 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC30.21■■■□□ 2.43
MSH5O43196 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC30.21■■■□□ 2.43
MSH5O43196 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC30.21■■■□□ 2.43
MSH5O43196 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC30.21■■■□□ 2.43
MSH5O43196 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC30.21■■■□□ 2.43
MSH5O43196 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC30.21■■■□□ 2.43
MSH5O43196 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC30.21■■■□□ 2.43
MSH5O43196 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
MSH5O43196 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC30.2■■■□□ 2.43
MSH5O43196 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
MSH5O43196 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC30.2■■■□□ 2.43
MSH5O43196 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC30.2■■■□□ 2.43
MSH5O43196 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
MSH5O43196 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC30.2■■■□□ 2.43
MSH5O43196 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
MSH5O43196 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC30.2■■■□□ 2.42
MSH5O43196 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC30.2■■■□□ 2.42
MSH5O43196 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC30.2■■■□□ 2.42
MSH5O43196 AF131216.4-201ENST00000638924 1588 ntBASIC30.2■■■□□ 2.42
MSH5O43196 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC30.19■■■□□ 2.42
MSH5O43196 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
MSH5O43196 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC30.19■■■□□ 2.42
MSH5O43196 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
MSH5O43196 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC30.19■■■□□ 2.42
MSH5O43196 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC30.18■■■□□ 2.42
MSH5O43196 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC30.18■■■□□ 2.42
MSH5O43196 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC30.18■■■□□ 2.42
MSH5O43196 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC30.18■■■□□ 2.42
MSH5O43196 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC30.18■■■□□ 2.42
MSH5O43196 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC30.18■■■□□ 2.42
MSH5O43196 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
MSH5O43196 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC30.17■■■□□ 2.42
MSH5O43196 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
MSH5O43196 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
MSH5O43196 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
MSH5O43196 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC30.17■■■□□ 2.42
MSH5O43196 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
MSH5O43196 SRD5A1P1-201ENST00000442297 786 ntBASIC30.17■■■□□ 2.42
MSH5O43196 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC30.16■■■□□ 2.42
MSH5O43196 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC30.16■■■□□ 2.42
MSH5O43196 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC30.16■■■□□ 2.42
MSH5O43196 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
MSH5O43196 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC30.15■■■□□ 2.42
MSH5O43196 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
MSH5O43196 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC30.15■■■□□ 2.42
MSH5O43196 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
MSH5O43196 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC30.15■■■□□ 2.42
MSH5O43196 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
MSH5O43196 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
MSH5O43196 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
MSH5O43196 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
MSH5O43196 CLTA-206ENST00000466396 695 ntTSL 2 BASIC30.14■■■□□ 2.42
MSH5O43196 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC30.14■■■□□ 2.42
MSH5O43196 STOX2-205ENST00000513034 807 ntTSL 3 BASIC30.14■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms