Protein–RNA interactions for Protein: O15266

SHOX, Short stature homeobox protein, humanhuman

Predictions only

Length 292 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOXO15266 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SHOXO15266 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC19.24■□□□□ 0.67
SHOXO15266 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
SHOXO15266 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHOXO15266 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHOXO15266 AC093536.1-201ENST00000569153 554 ntBASIC19.24■□□□□ 0.67
SHOXO15266 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.24■□□□□ 0.67
SHOXO15266 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHOXO15266 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHOXO15266 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHOXO15266 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SHOXO15266 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHOXO15266 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHOXO15266 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.23■□□□□ 0.67
SHOXO15266 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.23■□□□□ 0.67
SHOXO15266 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHOXO15266 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
SHOXO15266 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC19.23■□□□□ 0.67
SHOXO15266 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHOXO15266 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHOXO15266 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
SHOXO15266 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.23■□□□□ 0.67
SHOXO15266 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
SHOXO15266 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHOXO15266 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC19.22■□□□□ 0.67
SHOXO15266 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHOXO15266 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHOXO15266 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
SHOXO15266 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
SHOXO15266 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHOXO15266 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SHOXO15266 AC007029.1-201ENST00000604183 313 ntBASIC19.22■□□□□ 0.67
SHOXO15266 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHOXO15266 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC19.22■□□□□ 0.67
SHOXO15266 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC19.22■□□□□ 0.67
SHOXO15266 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHOXO15266 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.21■□□□□ 0.67
SHOXO15266 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHOXO15266 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
SHOXO15266 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHOXO15266 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHOXO15266 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHOXO15266 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SHOXO15266 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC19.21■□□□□ 0.67
SHOXO15266 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHOXO15266 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
SHOXO15266 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.21■□□□□ 0.67
SHOXO15266 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHOXO15266 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHOXO15266 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHOXO15266 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC19.2■□□□□ 0.66
SHOXO15266 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHOXO15266 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC19.2■□□□□ 0.66
SHOXO15266 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHOXO15266 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHOXO15266 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHOXO15266 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHOXO15266 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHOXO15266 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHOXO15266 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHOXO15266 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHOXO15266 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHOXO15266 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHOXO15266 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHOXO15266 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHOXO15266 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC19.19■□□□□ 0.66
SHOXO15266 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC19.19■□□□□ 0.66
SHOXO15266 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC19.19■□□□□ 0.66
SHOXO15266 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHOXO15266 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHOXO15266 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHOXO15266 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHOXO15266 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
SHOXO15266 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHOXO15266 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SHOXO15266 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHOXO15266 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHOXO15266 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHOXO15266 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SHOXO15266 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SHOXO15266 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC19.18■□□□□ 0.66
SHOXO15266 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHOXO15266 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.18■□□□□ 0.66
SHOXO15266 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SHOXO15266 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHOXO15266 AC141586.4-201ENST00000624558 1573 ntBASIC19.18■□□□□ 0.66
SHOXO15266 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHOXO15266 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHOXO15266 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHOXO15266 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.17■□□□□ 0.66
SHOXO15266 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC19.17■□□□□ 0.66
SHOXO15266 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHOXO15266 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHOXO15266 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHOXO15266 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHOXO15266 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.17■□□□□ 0.66
SHOXO15266 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHOXO15266 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHOXO15266 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SHOXO15266 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms