Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC39.63■■■■□ 3.94
CUX2O14529 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC39.63■■■■□ 3.93
CUX2O14529 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC39.63■■■■□ 3.93
CUX2O14529 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC39.63■■■■□ 3.93
CUX2O14529 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC39.63■■■■□ 3.93
CUX2O14529 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC39.62■■■■□ 3.93
CUX2O14529 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC39.62■■■■□ 3.93
CUX2O14529 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC39.62■■■■□ 3.93
CUX2O14529 AC009102.2-201ENST00000606772 1639 ntBASIC39.62■■■■□ 3.93
CUX2O14529 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC39.62■■■■□ 3.93
CUX2O14529 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC39.62■■■■□ 3.93
CUX2O14529 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC39.62■■■■□ 3.93
CUX2O14529 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC39.61■■■■□ 3.93
CUX2O14529 STX7-201ENST00000367937 1090 ntTSL 5 BASIC39.61■■■■□ 3.93
CUX2O14529 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC39.61■■■■□ 3.93
CUX2O14529 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC39.61■■■■□ 3.93
CUX2O14529 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC39.61■■■■□ 3.93
CUX2O14529 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC39.61■■■■□ 3.93
CUX2O14529 DBI-210ENST00000542275 757 ntTSL 5 BASIC39.6■■■■□ 3.93
CUX2O14529 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC39.6■■■■□ 3.93
CUX2O14529 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC39.6■■■■□ 3.93
CUX2O14529 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC39.59■■■■□ 3.93
CUX2O14529 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC39.59■■■■□ 3.93
CUX2O14529 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC39.58■■■■□ 3.93
CUX2O14529 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC39.58■■■■□ 3.93
CUX2O14529 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC39.58■■■■□ 3.93
CUX2O14529 WWOX-218ENST00000627394 894 ntTSL 5 BASIC39.57■■■■□ 3.93
CUX2O14529 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC39.57■■■■□ 3.92
CUX2O14529 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC39.57■■■■□ 3.92
CUX2O14529 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC39.56■■■■□ 3.92
CUX2O14529 FAM201B-201ENST00000458407 597 ntBASIC39.56■■■■□ 3.92
CUX2O14529 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC39.55■■■■□ 3.92
CUX2O14529 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC39.55■■■■□ 3.92
CUX2O14529 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC39.54■■■■□ 3.92
CUX2O14529 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC39.54■■■■□ 3.92
CUX2O14529 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC39.54■■■■□ 3.92
CUX2O14529 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC39.54■■■■□ 3.92
CUX2O14529 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC39.54■■■■□ 3.92
CUX2O14529 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC39.54■■■■□ 3.92
CUX2O14529 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC39.54■■■■□ 3.92
CUX2O14529 AC009086.3-201ENST00000623486 1008 ntBASIC39.54■■■■□ 3.92
CUX2O14529 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC39.54■■■■□ 3.92
CUX2O14529 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC39.53■■■■□ 3.92
CUX2O14529 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC39.53■■■■□ 3.92
CUX2O14529 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC39.53■■■■□ 3.92
CUX2O14529 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC39.53■■■■□ 3.92
CUX2O14529 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC39.52■■■■□ 3.92
CUX2O14529 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC39.52■■■■□ 3.92
CUX2O14529 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC39.52■■■■□ 3.92
CUX2O14529 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC39.52■■■■□ 3.92
CUX2O14529 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC39.52■■■■□ 3.92
CUX2O14529 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC39.52■■■■□ 3.92
CUX2O14529 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC39.52■■■■□ 3.92
CUX2O14529 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC39.51■■■■□ 3.92
CUX2O14529 METTL26-203ENST00000397664 604 ntTSL 2 BASIC39.51■■■■□ 3.92
CUX2O14529 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC39.51■■■■□ 3.92
CUX2O14529 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC39.51■■■■□ 3.92
CUX2O14529 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC39.51■■■■□ 3.91
CUX2O14529 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC39.5■■■■□ 3.91
CUX2O14529 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC39.5■■■■□ 3.91
CUX2O14529 AC087239.1-201ENST00000622671 572 ntBASIC39.5■■■■□ 3.91
CUX2O14529 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC39.5■■■■□ 3.91
CUX2O14529 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC39.5■■■■□ 3.91
CUX2O14529 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC39.49■■■■□ 3.91
CUX2O14529 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC39.49■■■■□ 3.91
CUX2O14529 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC39.49■■■■□ 3.91
CUX2O14529 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC39.49■■■■□ 3.91
CUX2O14529 TPRG1LP1-201ENST00000598702 760 ntBASIC39.49■■■■□ 3.91
CUX2O14529 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC39.48■■■■□ 3.91
CUX2O14529 AP004607.4-201ENST00000530158 1459 ntBASIC39.48■■■■□ 3.91
CUX2O14529 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC39.48■■■■□ 3.91
CUX2O14529 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC39.48■■■■□ 3.91
CUX2O14529 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC39.48■■■■□ 3.91
CUX2O14529 AP005435.1-201ENST00000529293 1178 ntBASIC39.48■■■■□ 3.91
CUX2O14529 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC39.48■■■■□ 3.91
CUX2O14529 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC39.48■■■■□ 3.91
CUX2O14529 REST-206ENST00000612429 1376 ntTSL 5 BASIC39.48■■■■□ 3.91
CUX2O14529 REST-207ENST00000616975 1370 ntTSL 5 BASIC39.48■■■■□ 3.91
CUX2O14529 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC39.48■■■■□ 3.91
CUX2O14529 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC39.47■■■■□ 3.91
CUX2O14529 GALNS-213ENST00000569433 723 ntTSL 3 BASIC39.47■■■■□ 3.91
CUX2O14529 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC39.47■■■■□ 3.91
CUX2O14529 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC39.46■■■■□ 3.91
CUX2O14529 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC39.46■■■■□ 3.91
CUX2O14529 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC39.46■■■■□ 3.91
CUX2O14529 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC39.46■■■■□ 3.91
CUX2O14529 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC39.46■■■■□ 3.91
CUX2O14529 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC39.46■■■■□ 3.91
CUX2O14529 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC39.46■■■■□ 3.91
CUX2O14529 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC39.45■■■■□ 3.91
CUX2O14529 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC39.45■■■■□ 3.91
CUX2O14529 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC39.45■■■■□ 3.91
CUX2O14529 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC39.45■■■■□ 3.91
CUX2O14529 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC39.45■■■■□ 3.91
CUX2O14529 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC39.45■■■■□ 3.91
CUX2O14529 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC39.44■■■■□ 3.9
CUX2O14529 KLF13-207ENST00000560473 489 ntTSL 3 BASIC39.44■■■■□ 3.9
CUX2O14529 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC39.44■■■■□ 3.9
CUX2O14529 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC39.44■■■■□ 3.9
CUX2O14529 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC39.43■■■■□ 3.9
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms