Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CBX4O00257 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CBX4O00257 USF2-207ENST00000595068 1612 ntTSL 5 BASIC23.22■■□□□ 1.31
CBX4O00257 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
CBX4O00257 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CBX4O00257 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CBX4O00257 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CBX4O00257 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CBX4O00257 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
CBX4O00257 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CBX4O00257 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC23.21■■□□□ 1.31
CBX4O00257 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
CBX4O00257 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CBX4O00257 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CBX4O00257 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CBX4O00257 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC23.2■■□□□ 1.3
CBX4O00257 AL512631.2-201ENST00000604634 923 ntBASIC23.2■■□□□ 1.3
CBX4O00257 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CBX4O00257 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
CBX4O00257 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CBX4O00257 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
CBX4O00257 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CBX4O00257 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CBX4O00257 MIR4466-201ENST00000606121 54 ntBASIC23.19■■□□□ 1.3
CBX4O00257 AL139246.5-201ENST00000606645 996 ntBASIC23.19■■□□□ 1.3
CBX4O00257 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC23.19■■□□□ 1.3
CBX4O00257 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
CBX4O00257 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CBX4O00257 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
CBX4O00257 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CBX4O00257 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CBX4O00257 EI24-213ENST00000618552 1747 ntTSL 5 BASIC23.19■■□□□ 1.3
CBX4O00257 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CBX4O00257 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CBX4O00257 AL136116.3-201ENST00000402907 1138 ntBASIC23.18■■□□□ 1.3
CBX4O00257 ABCB10P4-201ENST00000566803 2184 ntBASIC23.18■■□□□ 1.3
CBX4O00257 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CBX4O00257 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
CBX4O00257 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CBX4O00257 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CBX4O00257 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
CBX4O00257 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC23.17■■□□□ 1.3
CBX4O00257 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CBX4O00257 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CBX4O00257 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC23.17■■□□□ 1.3
CBX4O00257 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CBX4O00257 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CBX4O00257 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CBX4O00257 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CBX4O00257 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
CBX4O00257 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CBX4O00257 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CBX4O00257 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
CBX4O00257 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC23.16■■□□□ 1.3
CBX4O00257 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC23.16■■□□□ 1.3
CBX4O00257 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CBX4O00257 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC23.16■■□□□ 1.3
CBX4O00257 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC23.15■■□□□ 1.3
CBX4O00257 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC23.15■■□□□ 1.3
CBX4O00257 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
CBX4O00257 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CBX4O00257 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CBX4O00257 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC23.15■■□□□ 1.3
CBX4O00257 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CBX4O00257 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CBX4O00257 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CBX4O00257 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC23.14■■□□□ 1.3
CBX4O00257 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
CBX4O00257 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CBX4O00257 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC23.14■■□□□ 1.29
CBX4O00257 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
CBX4O00257 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CBX4O00257 AC009102.2-201ENST00000606772 1639 ntBASIC23.13■■□□□ 1.29
CBX4O00257 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC23.13■■□□□ 1.29
CBX4O00257 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CBX4O00257 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CBX4O00257 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CBX4O00257 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CBX4O00257 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
CBX4O00257 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC23.12■■□□□ 1.29
CBX4O00257 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CBX4O00257 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CBX4O00257 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
CBX4O00257 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CBX4O00257 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC23.11■■□□□ 1.29
CBX4O00257 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC23.11■■□□□ 1.29
CBX4O00257 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CBX4O00257 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CBX4O00257 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CBX4O00257 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC23.1■■□□□ 1.29
CBX4O00257 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
CBX4O00257 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC23.1■■□□□ 1.29
CBX4O00257 SRD5A1P1-201ENST00000442297 786 ntBASIC23.1■■□□□ 1.29
CBX4O00257 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CBX4O00257 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC23.1■■□□□ 1.29
CBX4O00257 AC110285.6-201ENST00000617652 491 ntBASIC23.1■■□□□ 1.29
CBX4O00257 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CBX4O00257 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
CBX4O00257 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CBX4O00257 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms