Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 AP000356.3-201ENST00000382243 753 ntBASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 AC026316.1-201ENST00000398900 414 ntBASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 LBH-202ENST00000401506 485 ntTSL 3 BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 OR2R1P-201ENST00000441404 914 ntBASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 DUX4L50-201ENST00000455245 715 ntBASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 AC003686.1-201ENST00000550956 1034 ntBASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 TPM1-223ENST00000560445 485 ntTSL 3 BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 SPCS2P2-201ENST00000603270 608 ntBASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 AL591471.1-201ENST00000621855 229 ntBASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.28
CTDP1Q9Y5B0 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 TNNI1-207ENST00000622580 6142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CTDP1Q9Y5B0 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 AC069218.1-201ENST00000435269 762 ntBASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 MIR4722-201ENST00000578292 60 ntBASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 AC051619.9-201ENST00000623237 597 ntBASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
CTDP1Q9Y5B0 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms