Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 HPD-204ENST00000543163 1709 ntTSL 5 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 AL359881.3-201ENST00000602640 1721 ntBASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 AC104581.4-201ENST00000623126 3052 ntBASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 ABI1-206ENST00000376140 1446 ntTSL 5 BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 MGST1-204ENST00000396209 979 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 AC020656.1-201ENST00000548900 599 ntTSL 3 BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 AC073413.1-201ENST00000603927 732 ntBASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 AC027601.3-201ENST00000622907 509 ntBASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 AC009039.2-201ENST00000624524 529 ntBASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 OR5P3-202ENST00000641167 1193 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 DMBT1P1-203ENST00000636837 4628 ntBASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 AC006504.5-208ENST00000588784 2401 ntBASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 KRT8P28-201ENST00000433288 1390 ntBASIC14.6□□□□□ -0.07
VPS9D1Q9Y2B5 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 FCAR-203ENST00000355524 1483 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 PDZD11-201ENST00000239666 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 COPE-202ENST00000349893 948 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 RBM38-204ENST00000371219 760 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 CDC23-201ENST00000394884 1079 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 TPRG1-AS2-201ENST00000425454 479 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 RGS5-214ENST00000429865 754 ntTSL 3 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 AP003171.2-201ENST00000528208 925 ntBASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 AC023310.1-201ENST00000554836 735 ntBASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 AL157871.5-201ENST00000555212 533 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 AC005586.2-201ENST00000563946 837 ntBASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms