Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PAAF1Q9BRP4 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 ADK-205ENST00000539909 1866 ntTSL 2 BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 AL591122.2-201ENST00000624125 1853 ntBASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 PFN2-202ENST00000423691 911 ntTSL 2 BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 RPL18AP3-201ENST00000462885 528 ntBASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 RN7SL81P-201ENST00000493781 261 ntBASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 AC095040.1-201ENST00000513286 675 ntBASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 WT1-AS_6.1-201ENST00000614919 121 ntBASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 NORAD-201ENST00000565493 5339 ntBASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
PAAF1Q9BRP4 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
PAAF1Q9BRP4 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PAAF1Q9BRP4 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.05
PAAF1Q9BRP4 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PAAF1Q9BRP4 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PAAF1Q9BRP4 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
PAAF1Q9BRP4 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PAAF1Q9BRP4 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.33■□□□□ 0.05
PAAF1Q9BRP4 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
PAAF1Q9BRP4 AC139749.1-202ENST00000617529 3139 ntBASIC15.33■□□□□ 0.05
PAAF1Q9BRP4 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 RN7SL8P-201ENST00000461771 266 ntBASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 RPL18AP8-201ENST00000486071 528 ntBASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 PARP8-206ENST00000503665 572 ntTSL 4 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 TMCO5B-205ENST00000530020 894 ntBASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 NEU3-207ENST00000534628 746 ntTSL 2 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 DNM1P30-201ENST00000563586 452 ntBASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 MIR3180-2-201ENST00000581748 88 ntBASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 AC005041.3-201ENST00000606287 649 ntBASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 AC107464.3-201ENST00000609172 737 ntBASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 WARS-203ENST00000358655 2466 ntTSL 2 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PAAF1Q9BRP4 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 LINC00552-201ENST00000625151 2579 ntBASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms