Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 AC005840.4-201ENST00000541242 2494 ntBASIC14.03□□□□□ -0.16
COL28A1Q2UY09 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 KRT8P14-201ENST00000414254 1442 ntBASIC14.02□□□□□ -0.16
COL28A1Q2UY09 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC14.02□□□□□ -0.16
COL28A1Q2UY09 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 BAK1P1-201ENST00000317045 636 ntBASIC14.02□□□□□ -0.17
COL28A1Q2UY09 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 LYPLA2P1-203ENST00000447689 696 ntBASIC14.02□□□□□ -0.17
COL28A1Q2UY09 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 AREG-202ENST00000502307 956 ntTSL 5 BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 AC027139.1-201ENST00000565286 951 ntBASIC14.02□□□□□ -0.17
COL28A1Q2UY09 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 FTLP5-201ENST00000586853 534 ntBASIC14.02□□□□□ -0.17
COL28A1Q2UY09 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 AC073592.2-201ENST00000623062 780 ntBASIC14.02□□□□□ -0.17
COL28A1Q2UY09 AC015656.1-201ENST00000624209 3578 ntBASIC14.02□□□□□ -0.17
COL28A1Q2UY09 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 CICP23-201ENST00000605013 2741 ntBASIC14.02□□□□□ -0.17
COL28A1Q2UY09 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL28A1Q2UY09 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 MROH4P-201ENST00000431302 1578 ntBASIC14.01□□□□□ -0.17
COL28A1Q2UY09 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.01□□□□□ -0.17
COL28A1Q2UY09 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 BCAS2P2-201ENST00000425064 674 ntBASIC14.01□□□□□ -0.17
COL28A1Q2UY09 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 AC004837.1-201ENST00000446267 564 ntBASIC14.01□□□□□ -0.17
COL28A1Q2UY09 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 MIR4683-201ENST00000579659 81 ntBASIC14.01□□□□□ -0.17
COL28A1Q2UY09 AC008805.1-201ENST00000590892 364 ntBASIC14.01□□□□□ -0.17
COL28A1Q2UY09 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 AC009955.4-201ENST00000597192 544 ntBASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms