Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
LIM2P55344 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC13.8□□□□□ -0.2
LIM2P55344 AC089987.1-201ENST00000551654 2209 ntBASIC13.8□□□□□ -0.2
LIM2P55344 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
LIM2P55344 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 CICP16-201ENST00000502609 2813 ntBASIC13.8□□□□□ -0.2
LIM2P55344 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
LIM2P55344 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC13.8□□□□□ -0.2
LIM2P55344 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
LIM2P55344 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
LIM2P55344 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC13.79□□□□□ -0.2
LIM2P55344 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13.79□□□□□ -0.2
LIM2P55344 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LIM2P55344 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LIM2P55344 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC13.79□□□□□ -0.2
LIM2P55344 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.79□□□□□ -0.2
LIM2P55344 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
LIM2P55344 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LIM2P55344 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
LIM2P55344 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
LIM2P55344 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
LIM2P55344 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
LIM2P55344 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC13.79□□□□□ -0.2
LIM2P55344 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LIM2P55344 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
LIM2P55344 SMS-201ENST00000379404 1174 ntTSL 3 BASIC13.79□□□□□ -0.2
LIM2P55344 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LIM2P55344 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC13.79□□□□□ -0.2
LIM2P55344 AC244107.1-201ENST00000442033 332 ntBASIC13.79□□□□□ -0.2
LIM2P55344 RNMTL1P1-201ENST00000454103 560 ntBASIC13.79□□□□□ -0.2
LIM2P55344 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC13.79□□□□□ -0.2
LIM2P55344 APOA2-204ENST00000464492 530 ntTSL 3 BASIC13.79□□□□□ -0.2
LIM2P55344 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC13.79□□□□□ -0.2
LIM2P55344 FAM8A2P-201ENST00000528813 1142 ntBASIC13.79□□□□□ -0.2
LIM2P55344 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC13.79□□□□□ -0.2
LIM2P55344 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC13.79□□□□□ -0.2
LIM2P55344 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC13.79□□□□□ -0.2
LIM2P55344 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC13.79□□□□□ -0.2
LIM2P55344 AC005962.1-201ENST00000584100 773 ntBASIC13.79□□□□□ -0.2
LIM2P55344 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC13.79□□□□□ -0.2
LIM2P55344 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC13.79□□□□□ -0.2
LIM2P55344 AC007663.3-201ENST00000609632 465 ntBASIC13.79□□□□□ -0.2
LIM2P55344 ABBA01031663.1-201ENST00000635630 790 ntBASIC13.79□□□□□ -0.2
LIM2P55344 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LIM2P55344 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LIM2P55344 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
LIM2P55344 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LIM2P55344 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
LIM2P55344 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
LIM2P55344 PPP1R26P4-201ENST00000619065 3527 ntBASIC13.79□□□□□ -0.2
LIM2P55344 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LIM2P55344 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
LIM2P55344 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LIM2P55344 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LIM2P55344 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
LIM2P55344 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC13.79□□□□□ -0.2
LIM2P55344 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LIM2P55344 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LIM2P55344 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
LIM2P55344 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LIM2P55344 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC13.78□□□□□ -0.2
LIM2P55344 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
LIM2P55344 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
LIM2P55344 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC13.78□□□□□ -0.2
LIM2P55344 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
LIM2P55344 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC13.78□□□□□ -0.2
LIM2P55344 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 PFN1P12-201ENST00000455938 534 ntBASIC13.78□□□□□ -0.2
LIM2P55344 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC13.78□□□□□ -0.2
LIM2P55344 AC005324.6-201ENST00000587972 613 ntBASIC13.78□□□□□ -0.2
LIM2P55344 DIO1-215ENST00000610607 796 ntTSL 5 BASIC13.78□□□□□ -0.2
LIM2P55344 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.78□□□□□ -0.2
LIM2P55344 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC13.78□□□□□ -0.2
LIM2P55344 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC13.78□□□□□ -0.2
LIM2P55344 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC13.78□□□□□ -0.2
LIM2P55344 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
LIM2P55344 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC13.78□□□□□ -0.2
LIM2P55344 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms