Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC15.15■□□□□ 0.02
CDH6P55285 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 HILS1-202ENST00000545329 423 ntBASIC15.15■□□□□ 0.02
CDH6P55285 SNX29P1-201ENST00000548357 1007 ntBASIC15.15■□□□□ 0.02
CDH6P55285 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC15.15■□□□□ 0.02
CDH6P55285 AP005482.1-201ENST00000563722 1273 ntBASIC15.15■□□□□ 0.02
CDH6P55285 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC15.15■□□□□ 0.02
CDH6P55285 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.15■□□□□ 0.02
CDH6P55285 AC239800.4-201ENST00000603712 296 ntBASIC15.15■□□□□ 0.02
CDH6P55285 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
CDH6P55285 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CDH6P55285 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CDH6P55285 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 AL359881.3-201ENST00000602640 1721 ntBASIC15.14■□□□□ 0.01
CDH6P55285 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CDH6P55285 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CDH6P55285 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
CDH6P55285 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC15.14■□□□□ 0.01
CDH6P55285 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC15.14■□□□□ 0.01
CDH6P55285 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.14■□□□□ 0.01
CDH6P55285 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.14■□□□□ 0.01
CDH6P55285 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC15.14■□□□□ 0.01
CDH6P55285 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
CDH6P55285 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC15.14■□□□□ 0.01
CDH6P55285 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC15.14■□□□□ 0.01
CDH6P55285 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC15.14■□□□□ 0.01
CDH6P55285 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC15.14■□□□□ 0.01
CDH6P55285 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 AC100850.1-201ENST00000506768 649 ntBASIC15.14■□□□□ 0.01
CDH6P55285 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC15.14■□□□□ 0.01
CDH6P55285 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC15.14■□□□□ 0.01
CDH6P55285 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
CDH6P55285 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC15.14■□□□□ 0.01
CDH6P55285 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC15.14■□□□□ 0.01
CDH6P55285 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CDH6P55285 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC15.14■□□□□ 0.01
CDH6P55285 AC132192.2-201ENST00000596206 1147 ntBASIC15.14■□□□□ 0.01
CDH6P55285 AC017083.2-201ENST00000608069 979 ntBASIC15.14■□□□□ 0.01
CDH6P55285 MIR6775-201ENST00000617557 69 ntBASIC15.14■□□□□ 0.01
CDH6P55285 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC15.14■□□□□ 0.01
CDH6P55285 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC15.14■□□□□ 0.01
CDH6P55285 KRT8P24-201ENST00000560290 1559 ntBASIC15.14■□□□□ 0.01
CDH6P55285 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
CDH6P55285 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
CDH6P55285 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CDH6P55285 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH6P55285 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC15.14■□□□□ 0.01
CDH6P55285 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CDH6P55285 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
CDH6P55285 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CDH6P55285 BEND3P1-201ENST00000421591 1944 ntBASIC15.13■□□□□ 0.01
CDH6P55285 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
CDH6P55285 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDH6P55285 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC15.13■□□□□ 0.01
CDH6P55285 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDH6P55285 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CDH6P55285 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
CDH6P55285 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDH6P55285 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDH6P55285 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CDH6P55285 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDH6P55285 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms