Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC18.9■□□□□ 0.62
HOXC9P31274 AL009176.1-201ENST00000607876 650 ntBASIC18.9■□□□□ 0.62
HOXC9P31274 AL359091.4-201ENST00000610052 409 ntBASIC18.9■□□□□ 0.62
HOXC9P31274 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
HOXC9P31274 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
HOXC9P31274 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
HOXC9P31274 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC18.9■□□□□ 0.62
HOXC9P31274 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 AC113367.3-201ENST00000508316 1912 ntBASIC18.9■□□□□ 0.62
HOXC9P31274 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC18.9■□□□□ 0.62
HOXC9P31274 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC18.9■□□□□ 0.62
HOXC9P31274 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC18.9■□□□□ 0.62
HOXC9P31274 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
HOXC9P31274 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC18.89■□□□□ 0.62
HOXC9P31274 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
HOXC9P31274 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
HOXC9P31274 USP39-220ENST00000613444 2161 ntTSL 2 BASIC18.89■□□□□ 0.62
HOXC9P31274 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
HOXC9P31274 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC18.89■□□□□ 0.61
HOXC9P31274 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC18.89■□□□□ 0.61
HOXC9P31274 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC18.89■□□□□ 0.61
HOXC9P31274 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC9P31274 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC18.89■□□□□ 0.61
HOXC9P31274 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC9P31274 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC9P31274 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC9P31274 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC9P31274 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC9P31274 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC9P31274 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC18.89■□□□□ 0.61
HOXC9P31274 AL139008.1-201ENST00000437894 228 ntBASIC18.89■□□□□ 0.61
HOXC9P31274 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC9P31274 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC9P31274 NSD1-211ENST00000511258 809 ntTSL 3 BASIC18.89■□□□□ 0.61
HOXC9P31274 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC18.89■□□□□ 0.61
HOXC9P31274 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC18.89■□□□□ 0.61
HOXC9P31274 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC18.89■□□□□ 0.61
HOXC9P31274 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC18.89■□□□□ 0.61
HOXC9P31274 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC9P31274 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC9P31274 FUCA1P1-201ENST00000374476 1351 ntBASIC18.89■□□□□ 0.61
HOXC9P31274 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC18.89■□□□□ 0.61
HOXC9P31274 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
HOXC9P31274 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC18.89■□□□□ 0.61
HOXC9P31274 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC9P31274 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC9P31274 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
HOXC9P31274 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC9P31274 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC9P31274 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
HOXC9P31274 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC9P31274 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
HOXC9P31274 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC9P31274 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC9P31274 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
HOXC9P31274 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC9P31274 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
HOXC9P31274 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC9P31274 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC9P31274 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC18.88■□□□□ 0.61
HOXC9P31274 AL135901.1-201ENST00000451812 333 ntBASIC18.88■□□□□ 0.61
HOXC9P31274 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC18.88■□□□□ 0.61
HOXC9P31274 KRT18P15-201ENST00000458108 1291 ntBASIC18.88■□□□□ 0.61
HOXC9P31274 AC025186.1-201ENST00000478174 870 ntBASIC18.88■□□□□ 0.61
HOXC9P31274 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC18.88■□□□□ 0.61
HOXC9P31274 PRSS3P1-201ENST00000503996 742 ntBASIC18.88■□□□□ 0.61
HOXC9P31274 RPS23-207ENST00000511844 530 ntTSL 2 BASIC18.88■□□□□ 0.61
HOXC9P31274 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC9P31274 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC18.88■□□□□ 0.61
HOXC9P31274 VENTXP3-201ENST00000546480 773 ntBASIC18.88■□□□□ 0.61
HOXC9P31274 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
HOXC9P31274 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC18.88■□□□□ 0.61
HOXC9P31274 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC9P31274 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC9P31274 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC18.88■□□□□ 0.61
HOXC9P31274 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
HOXC9P31274 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
HOXC9P31274 AC138761.6-201ENST00000583997 1423 ntBASIC18.88■□□□□ 0.61
HOXC9P31274 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC18.88■□□□□ 0.61
HOXC9P31274 TBC1D27-202ENST00000424239 1573 ntBASIC18.88■□□□□ 0.61
HOXC9P31274 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
HOXC9P31274 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC9P31274 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC9P31274 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC18.88■□□□□ 0.61
HOXC9P31274 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC18.88■□□□□ 0.61
HOXC9P31274 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC9P31274 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
HOXC9P31274 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC9P31274 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC9P31274 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC9P31274 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC9P31274 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms