Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC18.33■□□□□ 0.52
NPHP1O15259 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NPHP1O15259 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
NPHP1O15259 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
NPHP1O15259 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NPHP1O15259 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NPHP1O15259 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC18.33■□□□□ 0.52
NPHP1O15259 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC18.33■□□□□ 0.52
NPHP1O15259 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
NPHP1O15259 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NPHP1O15259 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NPHP1O15259 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NPHP1O15259 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NPHP1O15259 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC18.33■□□□□ 0.52
NPHP1O15259 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NPHP1O15259 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
NPHP1O15259 F10-203ENST00000409306 1450 ntTSL 3 BASIC18.33■□□□□ 0.52
NPHP1O15259 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NPHP1O15259 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NPHP1O15259 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC18.33■□□□□ 0.52
NPHP1O15259 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC18.33■□□□□ 0.52
NPHP1O15259 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC18.32■□□□□ 0.52
NPHP1O15259 MARK2P16-201ENST00000605714 1723 ntBASIC18.32■□□□□ 0.52
NPHP1O15259 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC18.32■□□□□ 0.52
NPHP1O15259 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
NPHP1O15259 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
NPHP1O15259 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC18.32■□□□□ 0.52
NPHP1O15259 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC18.32■□□□□ 0.52
NPHP1O15259 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
NPHP1O15259 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC18.32■□□□□ 0.52
NPHP1O15259 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC18.32■□□□□ 0.52
NPHP1O15259 AC114947.1-202ENST00000514136 344 ntBASIC18.32■□□□□ 0.52
NPHP1O15259 POLD4-208ENST00000532830 904 ntTSL 3 BASIC18.32■□□□□ 0.52
NPHP1O15259 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
NPHP1O15259 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC18.32■□□□□ 0.52
NPHP1O15259 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
NPHP1O15259 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
NPHP1O15259 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC18.32■□□□□ 0.52
NPHP1O15259 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
NPHP1O15259 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
NPHP1O15259 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NPHP1O15259 AC067750.1-201ENST00000608826 6545 ntBASIC18.32■□□□□ 0.52
NPHP1O15259 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC18.31■□□□□ 0.52
NPHP1O15259 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.31■□□□□ 0.52
NPHP1O15259 MRPL37P1-201ENST00000592451 1337 ntBASIC18.31■□□□□ 0.52
NPHP1O15259 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
NPHP1O15259 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
NPHP1O15259 AL627389.1-201ENST00000413508 1182 ntBASIC18.31■□□□□ 0.52
NPHP1O15259 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC18.31■□□□□ 0.52
NPHP1O15259 AL132780.4-201ENST00000624870 1135 ntBASIC18.31■□□□□ 0.52
NPHP1O15259 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
NPHP1O15259 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC18.31■□□□□ 0.52
NPHP1O15259 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC18.31■□□□□ 0.52
NPHP1O15259 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms