Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 AC116345.2-201ENST00000512837 523 ntBASIC15.85■□□□□ 0.13
VPS52Q8N1B4 SCARNA21-201ENST00000517026 139 ntBASIC15.85■□□□□ 0.13
VPS52Q8N1B4 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 AC005962.1-201ENST00000584100 773 ntBASIC15.85■□□□□ 0.13
VPS52Q8N1B4 AC009884.2-201ENST00000603110 324 ntBASIC15.85■□□□□ 0.13
VPS52Q8N1B4 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 MIR7845-201ENST00000618396 99 ntBASIC15.85■□□□□ 0.13
VPS52Q8N1B4 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.85■□□□□ 0.13
VPS52Q8N1B4 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.85■□□□□ 0.13
VPS52Q8N1B4 PTENP1-202ENST00000532280 3996 ntBASIC15.85■□□□□ 0.13
VPS52Q8N1B4 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 AC007191.1-201ENST00000623179 2995 ntBASIC15.84■□□□□ 0.13
VPS52Q8N1B4 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 AC253536.4-201ENST00000440539 267 ntBASIC15.84■□□□□ 0.13
VPS52Q8N1B4 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 LDHBP1-201ENST00000455730 1119 ntBASIC15.84■□□□□ 0.13
VPS52Q8N1B4 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 IGLV3-15-201ENST00000518356 244 ntBASIC15.84■□□□□ 0.13
VPS52Q8N1B4 CFL1-214ENST00000534769 758 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 RPL35-206ENST00000629845 340 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 FAM90A7P-201ENST00000382628 1395 ntBASIC15.84■□□□□ 0.13
VPS52Q8N1B4 FAM90A23P-201ENST00000400136 1395 ntBASIC15.84■□□□□ 0.13
VPS52Q8N1B4 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 AC003102.2-201ENST00000589195 1469 ntBASIC15.84■□□□□ 0.13
VPS52Q8N1B4 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS52Q8N1B4 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC15.83■□□□□ 0.13
VPS52Q8N1B4 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS52Q8N1B4 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC15.83■□□□□ 0.13
VPS52Q8N1B4 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS52Q8N1B4 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
VPS52Q8N1B4 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS52Q8N1B4 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
VPS52Q8N1B4 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS52Q8N1B4 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
VPS52Q8N1B4 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VPS52Q8N1B4 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VPS52Q8N1B4 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS52Q8N1B4 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS52Q8N1B4 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS52Q8N1B4 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
VPS52Q8N1B4 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS52Q8N1B4 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS52Q8N1B4 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
VPS52Q8N1B4 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms