Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 USP4-203ENST00000415188 1454 ntTSL 3 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 AC097359.2-201ENST00000604992 2389 ntBASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 SPOCK2-201ENST00000317376 5328 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 AL359881.3-201ENST00000602640 1721 ntBASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 RPL13AP20-201ENST00000459725 609 ntBASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 SDHAP3-202ENST00000515467 728 ntBASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 RRP7BP-205ENST00000566851 833 ntBASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 LINC01115-203ENST00000606068 577 ntBASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 AC244452.3-201ENST00000636814 210 ntBASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
PDLIM3Q53GG5 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
PDLIM3Q53GG5 FAM193A-201ENST00000324666 4846 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
PDLIM3Q53GG5 MAP4-204ENST00000395734 5590 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.46
PDLIM3Q53GG5 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
PDLIM3Q53GG5 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
PDLIM3Q53GG5 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC12.21□□□□□ -0.46
PDLIM3Q53GG5 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.46
PDLIM3Q53GG5 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
PDLIM3Q53GG5 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
PDLIM3Q53GG5 SPTBN2-201ENST00000309996 7866 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
PDLIM3Q53GG5 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
PDLIM3Q53GG5 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC12.21□□□□□ -0.46
PDLIM3Q53GG5 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
PDLIM3Q53GG5 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
PDLIM3Q53GG5 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
PDLIM3Q53GG5 SCN8A-202ENST00000355133 5820 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
PDLIM3Q53GG5 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 FES-203ENST00000394302 2133 ntTSL 5 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 NFATC2-201ENST00000371564 7525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 PTPRVP-205ENST00000641549 5067 ntBASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 GZMB-202ENST00000382540 816 ntTSL 5 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 LBH-202ENST00000401506 485 ntTSL 3 BASIC12.2□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms