Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC8.6□□□□□ -1.03
HSPG2P98160 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 AC124944.3-201ENST00000607976 1304 ntBASIC8.6□□□□□ -1.03
HSPG2P98160 AL591806.3-201ENST00000289779 2096 ntAPPRIS P5 TSL 2 BASIC8.6□□□□□ -1.03
HSPG2P98160 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC8.6□□□□□ -1.03
HSPG2P98160 AC023590.1-202ENST00000366457 781 ntTSL 3 BASIC8.6□□□□□ -1.03
HSPG2P98160 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC8.6□□□□□ -1.03
HSPG2P98160 TMCO1-203ENST00000464650 1100 ntTSL 2 BASIC8.6□□□□□ -1.03
HSPG2P98160 RN7SL479P-201ENST00000472003 300 ntBASIC8.6□□□□□ -1.03
HSPG2P98160 ZNF720-211ENST00000539915 837 ntTSL 3 BASIC8.6□□□□□ -1.03
HSPG2P98160 AC010547.1-202ENST00000567341 230 ntTSL 2 BASIC8.6□□□□□ -1.03
HSPG2P98160 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC8.6□□□□□ -1.03
HSPG2P98160 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 AC091951.1-201ENST00000512854 2465 ntBASIC8.6□□□□□ -1.03
HSPG2P98160 WAC-202ENST00000347934 2839 ntTSL 5 BASIC8.6□□□□□ -1.03
HSPG2P98160 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 IMPDH1P5-201ENST00000439688 1540 ntBASIC8.6□□□□□ -1.03
HSPG2P98160 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC8.6□□□□□ -1.03
HSPG2P98160 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC8.6□□□□□ -1.03
HSPG2P98160 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC8.6□□□□□ -1.03
HSPG2P98160 OR7E155P-201ENST00000412208 1014 ntBASIC8.6□□□□□ -1.03
HSPG2P98160 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC8.6□□□□□ -1.03
HSPG2P98160 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC8.6□□□□□ -1.03
HSPG2P98160 AL161644.1-201ENST00000426901 1111 ntTSL 2 BASIC8.6□□□□□ -1.03
HSPG2P98160 RPL3P9-201ENST00000463217 1183 ntBASIC8.6□□□□□ -1.03
HSPG2P98160 STEAP2-AS1-202ENST00000478318 627 ntTSL 3 BASIC8.6□□□□□ -1.03
HSPG2P98160 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC8.6□□□□□ -1.03
HSPG2P98160 CACNA1C-IT3-201ENST00000542680 622 ntTSL 3 BASIC8.6□□□□□ -1.03
HSPG2P98160 DUT-208ENST00000559540 1441 ntTSL 2 BASIC8.6□□□□□ -1.03
HSPG2P98160 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC8.6□□□□□ -1.03
HSPG2P98160 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 RNF4-216ENST00000511859 1373 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC8.6□□□□□ -1.03
HSPG2P98160 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC8.6□□□□□ -1.03
HSPG2P98160 DKFZP434H168-201ENST00000567381 1905 ntBASIC8.6□□□□□ -1.03
HSPG2P98160 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC8.6□□□□□ -1.03
HSPG2P98160 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 TUBA3GP-201ENST00000410028 1325 ntBASIC8.6□□□□□ -1.03
HSPG2P98160 AC136621.1-201ENST00000624017 2304 ntBASIC8.59□□□□□ -1.03
HSPG2P98160 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC8.59□□□□□ -1.03
HSPG2P98160 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
HSPG2P98160 AL121994.1-201ENST00000413189 402 ntBASIC8.59□□□□□ -1.03
HSPG2P98160 KRT19P4-201ENST00000443208 943 ntBASIC8.59□□□□□ -1.03
HSPG2P98160 FPGT-205ENST00000482102 561 ntTSL 4 BASIC8.59□□□□□ -1.03
HSPG2P98160 RN7SL2-201ENST00000490232 300 ntBASIC8.59□□□□□ -1.03
HSPG2P98160 PDPN-208ENST00000509009 571 ntTSL 4 BASIC8.59□□□□□ -1.03
HSPG2P98160 SNRPN-208ENST00000577565 1298 ntAPPRIS P1 TSL 5 BASIC8.59□□□□□ -1.03
HSPG2P98160 RN7SL4P-201ENST00000584058 295 ntBASIC8.59□□□□□ -1.03
HSPG2P98160 MED25-209ENST00000612791 881 ntTSL 5 BASIC8.59□□□□□ -1.03
HSPG2P98160 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
HSPG2P98160 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC8.59□□□□□ -1.03
HSPG2P98160 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC8.59□□□□□ -1.03
HSPG2P98160 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
HSPG2P98160 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
HSPG2P98160 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC8.59□□□□□ -1.03
HSPG2P98160 CRYGD-201ENST00000264376 619 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
HSPG2P98160 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
HSPG2P98160 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
HSPG2P98160 AC096677.3-201ENST00000413162 387 ntBASIC8.59□□□□□ -1.03
HSPG2P98160 VSTM1-205ENST00000425006 608 ntAPPRIS ALT2 TSL 5 BASIC8.59□□□□□ -1.03
HSPG2P98160 AL137077.1-201ENST00000442115 528 ntBASIC8.59□□□□□ -1.03
HSPG2P98160 AC113398.1-201ENST00000464124 406 ntBASIC8.59□□□□□ -1.03
HSPG2P98160 SMCO4-202ENST00000525141 889 ntAPPRIS P1 TSL 2 BASIC8.59□□□□□ -1.03
HSPG2P98160 AP001107.9-202ENST00000531602 613 ntTSL 2 BASIC8.59□□□□□ -1.03
HSPG2P98160 RN7SL460P-201ENST00000582806 258 ntBASIC8.59□□□□□ -1.03
HSPG2P98160 AL353581.1-201ENST00000606916 1224 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
HSPG2P98160 AMT-256ENST00000638063 1783 ntTSL 5 BASIC8.59□□□□□ -1.03
HSPG2P98160 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC8.59□□□□□ -1.03
HSPG2P98160 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC8.59□□□□□ -1.03
HSPG2P98160 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
HSPG2P98160 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
HSPG2P98160 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
HSPG2P98160 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC8.59□□□□□ -1.03
HSPG2P98160 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
HSPG2P98160 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
HSPG2P98160 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC8.59□□□□□ -1.03
HSPG2P98160 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
HSPG2P98160 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
HSPG2P98160 IQCF1-201ENST00000310914 695 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
HSPG2P98160 NAA10-205ENST00000393712 908 ntTSL 5 BASIC8.59□□□□□ -1.03
HSPG2P98160 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC8.59□□□□□ -1.03
HSPG2P98160 RPL29P2-201ENST00000488409 460 ntBASIC8.59□□□□□ -1.03
HSPG2P98160 PDZRN3-AS1-203ENST00000608743 780 ntTSL 5 BASIC8.59□□□□□ -1.03
HSPG2P98160 AC005609.1-201ENST00000625195 617 ntTSL 5 BASIC8.59□□□□□ -1.03
HSPG2P98160 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
HSPG2P98160 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
HSPG2P98160 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC8.59□□□□□ -1.03
HSPG2P98160 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC8.59□□□□□ -1.04
HSPG2P98160 TIMM10-201ENST00000257245 680 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.04
HSPG2P98160 MB-204ENST00000401702 1043 ntTSL 1 (best) BASIC8.59□□□□□ -1.04
HSPG2P98160 AC069277.1-201ENST00000433639 1083 ntTSL 1 (best) BASIC8.59□□□□□ -1.04
HSPG2P98160 ZBTB46-AS1-201ENST00000435912 533 ntTSL 3 BASIC8.59□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms