Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AC020910.6-201ENST00000623084 1459 ntBASIC13.02□□□□□ -0.33
H3F3AP84243 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
H3F3AP84243 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
H3F3AP84243 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
H3F3AP84243 CYP4F23P-201ENST00000593402 1579 ntBASIC13.02□□□□□ -0.33
H3F3AP84243 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
H3F3AP84243 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
H3F3AP84243 AC004899.1-201ENST00000424687 1714 ntBASIC13.02□□□□□ -0.33
H3F3AP84243 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC13.02□□□□□ -0.33
H3F3AP84243 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
H3F3AP84243 MBLAC2-202ENST00000514906 1936 ntBASIC13.01□□□□□ -0.33
H3F3AP84243 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.01□□□□□ -0.33
H3F3AP84243 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.01□□□□□ -0.33
H3F3AP84243 AC027601.5-201ENST00000624065 2482 ntBASIC13.01□□□□□ -0.33
H3F3AP84243 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.01□□□□□ -0.33
H3F3AP84243 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.01□□□□□ -0.33
H3F3AP84243 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
H3F3AP84243 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
H3F3AP84243 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.01□□□□□ -0.33
H3F3AP84243 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
H3F3AP84243 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 BRWD1P1-201ENST00000401091 371 ntBASIC13.01□□□□□ -0.33
H3F3AP84243 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC13.01□□□□□ -0.33
H3F3AP84243 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC13.01□□□□□ -0.33
H3F3AP84243 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC13.01□□□□□ -0.33
H3F3AP84243 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 PTPA-218ENST00000435132 618 ntTSL 2 BASIC13.01□□□□□ -0.33
H3F3AP84243 RNMTL1P1-201ENST00000454103 560 ntBASIC13.01□□□□□ -0.33
H3F3AP84243 RPL18P13-201ENST00000478088 569 ntBASIC13.01□□□□□ -0.33
H3F3AP84243 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC13.01□□□□□ -0.33
H3F3AP84243 AC006122.1-201ENST00000493323 440 ntBASIC13.01□□□□□ -0.33
H3F3AP84243 HLA-J-204ENST00000495278 958 ntBASIC13.01□□□□□ -0.33
H3F3AP84243 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
H3F3AP84243 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC13.01□□□□□ -0.33
H3F3AP84243 AC126915.1-201ENST00000522847 1038 ntBASIC13.01□□□□□ -0.33
H3F3AP84243 AC003686.1-201ENST00000550956 1034 ntBASIC13.01□□□□□ -0.33
H3F3AP84243 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC13.01□□□□□ -0.33
H3F3AP84243 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC13.01□□□□□ -0.33
H3F3AP84243 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC13.01□□□□□ -0.33
H3F3AP84243 AL008638.5-201ENST00000623814 1298 ntBASIC13.01□□□□□ -0.33
H3F3AP84243 PCBP2-OT1-201ENST00000634357 590 ntBASIC13.01□□□□□ -0.33
H3F3AP84243 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 FAM90A7P-201ENST00000382628 1395 ntBASIC13.01□□□□□ -0.33
H3F3AP84243 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 FAM90A23P-201ENST00000400136 1395 ntBASIC13.01□□□□□ -0.33
H3F3AP84243 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.01□□□□□ -0.33
H3F3AP84243 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
H3F3AP84243 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC13.01□□□□□ -0.33
H3F3AP84243 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
H3F3AP84243 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC13.01□□□□□ -0.33
H3F3AP84243 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.01□□□□□ -0.33
H3F3AP84243 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
H3F3AP84243 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13□□□□□ -0.33
H3F3AP84243 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC13□□□□□ -0.33
H3F3AP84243 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC13□□□□□ -0.33
H3F3AP84243 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13□□□□□ -0.33
H3F3AP84243 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC13□□□□□ -0.33
H3F3AP84243 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC13□□□□□ -0.33
H3F3AP84243 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC13□□□□□ -0.33
H3F3AP84243 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
H3F3AP84243 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13□□□□□ -0.33
H3F3AP84243 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC13□□□□□ -0.33
H3F3AP84243 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 DPM3-202ENST00000368399 517 ntBASIC13□□□□□ -0.33
H3F3AP84243 AC244107.1-201ENST00000442033 332 ntBASIC13□□□□□ -0.33
H3F3AP84243 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms